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The map label for this gene is rfbB [C]

Identifier: 46446189

GI number: 46446189

Start: 691066

End: 691983

Strand: Reverse

Name: rfbB [C]

Synonym: pc0555

Alternate gene names: 46446189

Gene position: 691983-691066 (Counterclockwise)

Preceding gene: 46446190

Following gene: 46446188

Centisome position: 28.66

GC content: 35.19

Gene sequence:

>918_bases
TTGCTGGCTATTACCGGAACCTCAGGATTTATTGGAAAATATATTTGTCCTTACCTTCCTTTTCCACAAAAAAAATTATT
CTCTTCATCCGTTTCTGAATATATTTTAGATGAGGGAAATAATTCAAAATCGATTACTTTCCCCCCACATGACTTGTCCT
CTTTTATTAAAGACACCAGTACATTAATTCATCTCGCTTGCAAATCCAATCCCCGAAACACAATTTTTTCTTTTCAGAAA
GATTTAACCTTTACCACTCAATTATTTGAACATTTTGCTCAGGCAAATCCTAACGGCCATATTATTTTTGCTAGCACAGG
TGGGAATATGTACTCAAGCGAACTTCCCCACAAACCAAGAACTGAAAAAGATCTTCCTTCTCCCAATTCTATCTATAGTG
TTCAAAAACTGGCTGCAGAACATTATCTACGGTTAATGTGCCAAACTTATGGAATCTCTGCGACGGTCCTTCGAATCAGT
AATCCTTACGGAACTCTTCTGGAACCTGAACGATTACAAGGTTTGATTGGAATTGCATTTAACAAAATTTTACTTAACCA
AACACTAACTATTTTTGATTCTTCAGATAGTGTGAGAGACTATATCCATTTAGAAGATTTAGCTTCTGTATTTCAAATAG
TTAGCAGAAATAAGCCTTTAAAAGGGCTATTTAGCGTTTTTAATATTGGATGTGGAGTAGGATACTCTATTCAGAATGTC
ATTCAGCTAATAGAAAAAATTTCTAATCGATCCTTGCAAACTATTTACAGTGAATTGGCAATCACGACAAAGCCTTCCTG
GAGCGTGTTATCTCATGAATATTTTCATTCGCAATTTGGTTGGCGACCTCAAGTCAATTTAGAAAAAGGACTTGAAAAAA
TGTGGAATGCAGCTCTCTCTCACTCACAAAATATATAA

Upstream 100 bases:

>100_bases
TAATAAAGTTCTAGGATATAAATCCAAGTTTTTTTAGCATATTCGATTAAGTTTTTATGATTTAGAAATTTAGACAATAA
ATGTTTTTTAGGAGAGACAC

Downstream 100 bases:

>100_bases
TTTGGTAAATTTTATTTATGGATAATGAAACACCTCTTATTTCTGTTGTCATTCCTGTTTATAATCACGAAAAATTTGTC
TCTATAGCACTCGATTCTGT

Product: putative dTDP-glucose 4,6-dehydratase, rfbB

Products: NA

Alternate protein names: Galactowaldenase; UDP-galactose 4-epimerase [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLAITGTSGFIGKYICPYLPFPQKKLFSSSVSEYILDEGNNSKSITFPPHDLSSFIKDTSTLIHLACKSNPRNTIFSFQK
DLTFTTQLFEHFAQANPNGHIIFASTGGNMYSSELPHKPRTEKDLPSPNSIYSVQKLAAEHYLRLMCQTYGISATVLRIS
NPYGTLLEPERLQGLIGIAFNKILLNQTLTIFDSSDSVRDYIHLEDLASVFQIVSRNKPLKGLFSVFNIGCGVGYSIQNV
IQLIEKISNRSLQTIYSELAITTKPSWSVLSHEYFHSQFGWRPQVNLEKGLEKMWNAALSHSQNI

Sequences:

>Translated_305_residues
MLAITGTSGFIGKYICPYLPFPQKKLFSSSVSEYILDEGNNSKSITFPPHDLSSFIKDTSTLIHLACKSNPRNTIFSFQK
DLTFTTQLFEHFAQANPNGHIIFASTGGNMYSSELPHKPRTEKDLPSPNSIYSVQKLAAEHYLRLMCQTYGISATVLRIS
NPYGTLLEPERLQGLIGIAFNKILLNQTLTIFDSSDSVRDYIHLEDLASVFQIVSRNKPLKGLFSVFNIGCGVGYSIQNV
IQLIEKISNRSLQTIYSELAITTKPSWSVLSHEYFHSQFGWRPQVNLEKGLEKMWNAALSHSQNI
>Mature_305_residues
MLAITGTSGFIGKYICPYLPFPQKKLFSSSVSEYILDEGNNSKSITFPPHDLSSFIKDTSTLIHLACKSNPRNTIFSFQK
DLTFTTQLFEHFAQANPNGHIIFASTGGNMYSSELPHKPRTEKDLPSPNSIYSVQKLAAEHYLRLMCQTYGISATVLRIS
NPYGTLLEPERLQGLIGIAFNKILLNQTLTIFDSSDSVRDYIHLEDLASVFQIVSRNKPLKGLFSVFNIGCGVGYSIQNV
IQLIEKISNRSLQTIYSELAITTKPSWSVLSHEYFHSQFGWRPQVNLEKGLEKMWNAALSHSQNI

Specific function: DTDP-L-RHAMNOSE BIOSYNTHESIS WITHIN THE O ANTIGEN BIOSYNTHESIS PATHWAY OF LIPOPOLYSACCHARIDE BIOSYNTHESIS. [C]

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sugar epimerase family [H]

Homologues:

Organism=Escherichia coli, GI1788353, Length=194, Percent_Identity=25.7731958762887, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: =5.1.3.2 [H]

Molecular weight: Translated: 34281; Mature: 34281

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAITGTSGFIGKYICPYLPFPQKKLFSSSVSEYILDEGNNSKSITFPPHDLSSFIKDTS
CEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHH
TLIHLACKSNPRNTIFSFQKDLTFTTQLFEHFAQANPNGHIIFASTGGNMYSSELPHKPR
HHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
TEKDLPSPNSIYSVQKLAAEHYLRLMCQTYGISATVLRISNPYGTLLEPERLQGLIGIAF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHH
NKILLNQTLTIFDSSDSVRDYIHLEDLASVFQIVSRNKPLKGLFSVFNIGCGVGYSIQNV
HHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHH
IQLIEKISNRSLQTIYSELAITTKPSWSVLSHEYFHSQFGWRPQVNLEKGLEKMWNAALS
HHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
HSQNI
HCCCC
>Mature Secondary Structure
MLAITGTSGFIGKYICPYLPFPQKKLFSSSVSEYILDEGNNSKSITFPPHDLSSFIKDTS
CEEEECCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHH
TLIHLACKSNPRNTIFSFQKDLTFTTQLFEHFAQANPNGHIIFASTGGNMYSSELPHKPR
HHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
TEKDLPSPNSIYSVQKLAAEHYLRLMCQTYGISATVLRISNPYGTLLEPERLQGLIGIAF
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHH
NKILLNQTLTIFDSSDSVRDYIHLEDLASVFQIVSRNKPLKGLFSVFNIGCGVGYSIQNV
HHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHH
IQLIEKISNRSLQTIYSELAITTKPSWSVLSHEYFHSQFGWRPQVNLEKGLEKMWNAALS
HHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
HSQNI
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]