Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 46446188

GI number: 46446188

Start: 688976

End: 691048

Strand: Reverse

Name: yibD [C]

Synonym: pc0554

Alternate gene names: 46446188

Gene position: 691048-688976 (Counterclockwise)

Preceding gene: 46446189

Following gene: 46446187

Centisome position: 28.62

GC content: 34.01

Gene sequence:

>2073_bases
ATGGATAATGAAACACCTCTTATTTCTGTTGTCATTCCTGTTTATAATCACGAAAAATTTGTCTCTATAGCACTCGATTC
TGTATTACATCAGAATTATCCTCTAATTGAAATTATCATTATTGACGATGGATCAAAAGATCACAGCGTTGAAATAGTTG
AACAATGGTTAAAACAAAACCAAACTTCAAAACAAGGATATTCATTTACTTTCATTCGTCAGCAAAATTCTGGGGCACAT
GCCACAATTAATCGTGGTTTGACAATAGCAAAAGGTTCACTATTGACGATTCTCAATTCTGACGATATTTACGAAAGAGA
TCGATTAAAAAAGCTAGTGGATAGACTTCAAACGGAAAAAGGAAGGCTCATTTTTTCTGGAATTAAAGGAATTGATGATC
AGGGAGTAGATTTACCGTTTTCTCATCCCTGGAAAAAATCTTATGAAGATAGCCTTTGTTCATTAGTAGAGATGCCAACT
GTTGGCTTTCAACTCATGAAAAGCAACCTTGCTATAAGTACAGGTAACTTACTATTTACAAAAGATCTTTATGAAGCAGT
TGGTGGATTTAGAAATTTGAAATTAGCGCATGACTATGATTTTTTACTTAGGGCTTTACTTCATGAAGAACCCATTTTTT
TTGATGAGCCGCTCTATTTATACCGTCTCCACAGTAATAATACATTTTCTCAAATCAATCACTTACTTCAATCCGATCTG
AATGAAATTTATCGTTCTTATCTTCTAGAAATTTCTAAGAGTCCTCCTTTAAATGTCCAAGCTCCATGCCATACTTATTG
GCCACTTGCTTTTCCCCTCATTCGTGATCGAATGAATATGGATCAAGCTCTTAATTATTACCTCACTAAACCTCAACCCC
AGCTTAGCACAAAACTTGCTGATGATAACAAAAAAACTTACCCCTCTCTTAATACGACTAAAAAAATAAAAATCTCTCTT
ATTACTCATGAACTAAGTTTAACAGGGGCACCAAAGGTTGTCGTTGATTTAGCAATTCGTTTAAAACAAGATGGGCACTA
TGTGAATGTCATTAGCTTAAAAAACGGTCCGATGCGCCAACAATTAGAAAATCAAGGGATTTCAATTTCTGTTATTCCTA
AATTCACCTATGATTTAACTTTTCATAAAAATAGTTTTATCTCAAAAGCAGCCAGAATAATTAATACTTTCTGGATGATG
TTAAAACTCCAACGAACTATGATTGGAAATTCTGTTGCTGTTGCATTTTATTTAACGCTTCTTTCACTGAATCCCTTTTA
TCGGATATTTTGGTACATTCATGAATCTCTTCCTCCTGCCGCATTATTGAATGTTAACCGAAAAAGAAATGCTTTACTTG
ACAAAATGAAAGCAAATTCCAACGTGAAAATTTGGTTTGGATCCGATAATACGAGAGAGATATGGAAAAAAGCAGGATTT
TCTGGGACGACAAAATACTGGAGCGGGATAAACGCTTCAAAAAAAAGGCCATCTTCTCGTTCTGGTCCCATCTCAGAAAT
TTTATCTGTGGGAACAAGCTCTGCTCGTAAAGGAACCTACTATCTGATCGAAGCTTTCATTAAAGGAATATTAGAAAAAT
CTATTCCTGATCATGTAAACTTAACGATCATTGGATTTTTTGAAACTGTGAATCGACCTGATTGTCATTTTTTAGGCGAC
CTTATTTTAAAAATCGTTAACTATGGTTTATTAGATCGCATTCATTTAATGGCATCTCTTCAGCCTGATCAAATCGATTA
TTATTATCATAGAGCAGATTTATATATTCAAGCTTCAATCTCCGAATGCCTTCCCTTAGCTATATTTCAAGCAATGGCAA
TTGGTTTACCCATTATTAGCACAAATGTCAATGGATGTCCTGAAGCAATTGAAGATGGTAAAACTGGCTACATTTGTTAC
CCTAGAAGTCATCAAGCTCTTTTGCATACAATTCTTAAAGCTTTAGCTGATCCCGAAAAAACTCGGCAGATGGGAGAACA
AGCACAAAAAATATTTATAGAAAAATTCAATATAGAGAAAAACTTTAAAGAAATTAATCAAGTGTTTTTTTAA

Upstream 100 bases:

>100_bases
TTGGTTGGCGACCTCAAGTCAATTTAGAAAAAGGACTTGAAAAAATGTGGAATGCAGCTCTCTCTCACTCACAAAATATA
TAATTTGGTAAATTTTATTT

Downstream 100 bases:

>100_bases
TTAAATTGATTTAAATACACTATTTTTTTTATAAGCACAGCATTTTCTCTTTCTTTACAAAAAATAAACAGTTTATTGAT
ACAATAGAAAAATTATAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 690; Mature: 690

Protein sequence:

>690_residues
MDNETPLISVVIPVYNHEKFVSIALDSVLHQNYPLIEIIIIDDGSKDHSVEIVEQWLKQNQTSKQGYSFTFIRQQNSGAH
ATINRGLTIAKGSLLTILNSDDIYERDRLKKLVDRLQTEKGRLIFSGIKGIDDQGVDLPFSHPWKKSYEDSLCSLVEMPT
VGFQLMKSNLAISTGNLLFTKDLYEAVGGFRNLKLAHDYDFLLRALLHEEPIFFDEPLYLYRLHSNNTFSQINHLLQSDL
NEIYRSYLLEISKSPPLNVQAPCHTYWPLAFPLIRDRMNMDQALNYYLTKPQPQLSTKLADDNKKTYPSLNTTKKIKISL
ITHELSLTGAPKVVVDLAIRLKQDGHYVNVISLKNGPMRQQLENQGISISVIPKFTYDLTFHKNSFISKAARIINTFWMM
LKLQRTMIGNSVAVAFYLTLLSLNPFYRIFWYIHESLPPAALLNVNRKRNALLDKMKANSNVKIWFGSDNTREIWKKAGF
SGTTKYWSGINASKKRPSSRSGPISEILSVGTSSARKGTYYLIEAFIKGILEKSIPDHVNLTIIGFFETVNRPDCHFLGD
LILKIVNYGLLDRIHLMASLQPDQIDYYYHRADLYIQASISECLPLAIFQAMAIGLPIISTNVNGCPEAIEDGKTGYICY
PRSHQALLHTILKALADPEKTRQMGEQAQKIFIEKFNIEKNFKEINQVFF

Sequences:

>Translated_690_residues
MDNETPLISVVIPVYNHEKFVSIALDSVLHQNYPLIEIIIIDDGSKDHSVEIVEQWLKQNQTSKQGYSFTFIRQQNSGAH
ATINRGLTIAKGSLLTILNSDDIYERDRLKKLVDRLQTEKGRLIFSGIKGIDDQGVDLPFSHPWKKSYEDSLCSLVEMPT
VGFQLMKSNLAISTGNLLFTKDLYEAVGGFRNLKLAHDYDFLLRALLHEEPIFFDEPLYLYRLHSNNTFSQINHLLQSDL
NEIYRSYLLEISKSPPLNVQAPCHTYWPLAFPLIRDRMNMDQALNYYLTKPQPQLSTKLADDNKKTYPSLNTTKKIKISL
ITHELSLTGAPKVVVDLAIRLKQDGHYVNVISLKNGPMRQQLENQGISISVIPKFTYDLTFHKNSFISKAARIINTFWMM
LKLQRTMIGNSVAVAFYLTLLSLNPFYRIFWYIHESLPPAALLNVNRKRNALLDKMKANSNVKIWFGSDNTREIWKKAGF
SGTTKYWSGINASKKRPSSRSGPISEILSVGTSSARKGTYYLIEAFIKGILEKSIPDHVNLTIIGFFETVNRPDCHFLGD
LILKIVNYGLLDRIHLMASLQPDQIDYYYHRADLYIQASISECLPLAIFQAMAIGLPIISTNVNGCPEAIEDGKTGYICY
PRSHQALLHTILKALADPEKTRQMGEQAQKIFIEKFNIEKNFKEINQVFF
>Mature_690_residues
MDNETPLISVVIPVYNHEKFVSIALDSVLHQNYPLIEIIIIDDGSKDHSVEIVEQWLKQNQTSKQGYSFTFIRQQNSGAH
ATINRGLTIAKGSLLTILNSDDIYERDRLKKLVDRLQTEKGRLIFSGIKGIDDQGVDLPFSHPWKKSYEDSLCSLVEMPT
VGFQLMKSNLAISTGNLLFTKDLYEAVGGFRNLKLAHDYDFLLRALLHEEPIFFDEPLYLYRLHSNNTFSQINHLLQSDL
NEIYRSYLLEISKSPPLNVQAPCHTYWPLAFPLIRDRMNMDQALNYYLTKPQPQLSTKLADDNKKTYPSLNTTKKIKISL
ITHELSLTGAPKVVVDLAIRLKQDGHYVNVISLKNGPMRQQLENQGISISVIPKFTYDLTFHKNSFISKAARIINTFWMM
LKLQRTMIGNSVAVAFYLTLLSLNPFYRIFWYIHESLPPAALLNVNRKRNALLDKMKANSNVKIWFGSDNTREIWKKAGF
SGTTKYWSGINASKKRPSSRSGPISEILSVGTSSARKGTYYLIEAFIKGILEKSIPDHVNLTIIGFFETVNRPDCHFLGD
LILKIVNYGLLDRIHLMASLQPDQIDYYYHRADLYIQASISECLPLAIFQAMAIGLPIISTNVNGCPEAIEDGKTGYICY
PRSHQALLHTILKALADPEKTRQMGEQAQKIFIEKFNIEKNFKEINQVFF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=102, Percent_Identity=34.3137254901961, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 78730; Mature: 78730

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNETPLISVVIPVYNHEKFVSIALDSVLHQNYPLIEIIIIDDGSKDHSVEIVEQWLKQN
CCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCC
QTSKQGYSFTFIRQQNSGAHATINRGLTIAKGSLLTILNSDDIYERDRLKKLVDRLQTEK
CCCCCCCEEEEEEECCCCCCEEECCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCC
GRLIFSGIKGIDDQGVDLPFSHPWKKSYEDSLCSLVEMPTVGFQLMKSNLAISTGNLLFT
CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCEEECCCEEEE
KDLYEAVGGFRNLKLAHDYDFLLRALLHEEPIFFDEPLYLYRLHSNNTFSQINHLLQSDL
HHHHHHHCCCCCCEEECCHHHHHHHHHHCCCCEECCCEEEEEEECCCCHHHHHHHHHHHH
NEIYRSYLLEISKSPPLNVQAPCHTYWPLAFPLIRDRMNMDQALNYYLTKPQPQLSTKLA
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHEEECCCCCHHHHHCC
DDNKKTYPSLNTTKKIKISLITHELSLTGAPKVVVDLAIRLKQDGHYVNVISLKNGPMRQ
CCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHEECCCCEEEEEEECCCCHHH
QLENQGISISVIPKFTYDLTFHKNSFISKAARIINTFWMMLKLQRTMIGNSVAVAFYLTL
HHHHCCCEEEEEECEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LSLNPFYRIFWYIHESLPPAALLNVNRKRNALLDKMKANSNVKIWFGSDNTREIWKKAGF
HHCCHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCCC
SGTTKYWSGINASKKRPSSRSGPISEILSVGTSSARKGTYYLIEAFIKGILEKSIPDHVN
CCCHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
LTIIGFFETVNRPDCHFLGDLILKIVNYGLLDRIHLMASLQPDQIDYYYHRADLYIQASI
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECH
SECLPLAIFQAMAIGLPIISTNVNGCPEAIEDGKTGYICYPRSHQALLHTILKALADPEK
HHHHHHHHHHHHHHCCEEEECCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCHH
TRQMGEQAQKIFIEKFNIEKNFKEINQVFF
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MDNETPLISVVIPVYNHEKFVSIALDSVLHQNYPLIEIIIIDDGSKDHSVEIVEQWLKQN
CCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCC
QTSKQGYSFTFIRQQNSGAHATINRGLTIAKGSLLTILNSDDIYERDRLKKLVDRLQTEK
CCCCCCCEEEEEEECCCCCCEEECCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCC
GRLIFSGIKGIDDQGVDLPFSHPWKKSYEDSLCSLVEMPTVGFQLMKSNLAISTGNLLFT
CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCEEECCCEEEE
KDLYEAVGGFRNLKLAHDYDFLLRALLHEEPIFFDEPLYLYRLHSNNTFSQINHLLQSDL
HHHHHHHCCCCCCEEECCHHHHHHHHHHCCCCEECCCEEEEEEECCCCHHHHHHHHHHHH
NEIYRSYLLEISKSPPLNVQAPCHTYWPLAFPLIRDRMNMDQALNYYLTKPQPQLSTKLA
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHEEECCCCCHHHHHCC
DDNKKTYPSLNTTKKIKISLITHELSLTGAPKVVVDLAIRLKQDGHYVNVISLKNGPMRQ
CCCCCCCCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHEECCCCEEEEEEECCCCHHH
QLENQGISISVIPKFTYDLTFHKNSFISKAARIINTFWMMLKLQRTMIGNSVAVAFYLTL
HHHHCCCEEEEEECEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
LSLNPFYRIFWYIHESLPPAALLNVNRKRNALLDKMKANSNVKIWFGSDNTREIWKKAGF
HHCCHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHCCC
SGTTKYWSGINASKKRPSSRSGPISEILSVGTSSARKGTYYLIEAFIKGILEKSIPDHVN
CCCHHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
LTIIGFFETVNRPDCHFLGDLILKIVNYGLLDRIHLMASLQPDQIDYYYHRADLYIQASI
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEEECH
SECLPLAIFQAMAIGLPIISTNVNGCPEAIEDGKTGYICYPRSHQALLHTILKALADPEK
HHHHHHHHHHHHHHCCEEEECCCCCCHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCHH
TRQMGEQAQKIFIEKFNIEKNFKEINQVFF
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA