Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46445683
Identifier: 46445683
GI number: 46445683
Start: 88089
End: 88946
Strand: Reverse
Name: 46445683
Synonym: pc0049
Alternate gene names: NA
Gene position: 88946-88089 (Counterclockwise)
Preceding gene: 46445684
Following gene: 46445682
Centisome position: 3.68
GC content: 30.54
Gene sequence:
>858_bases ATGTCAATAAATTTAAATTCTTCAATGTGTAATCCCATTGATTCTTTAAATCAACCAAAAGAAGTTGTATGGGAAGAAAA TGTATGTGAAATGAATAATTGTTCTCTTACTTCCGAGAATAAAATTTCTGTCATAGCCAAGAATATGCTTCCTGTTGAAG AAGAAGTAATTTTTACATCCTTTAATTGCCCTATTACTCTCAGCCCATTTGTAGATCCGGTTGTAGATGAATGTGGACAT ACATTTGAACAAGAAGCAATCATGCAAATTTATAACAGAGCAATTGCAAGAGGAACTCCATTTACATGTCCTATGGACCC TAGTAAAATTCTAGATGTGAACAAACTGGTTAAAAATTATAATTTAGCTAGTGCCCAAGAAGAAGTAGAAGAATTTACTA AAAAGTATACTTCTGAAAAAAAAACCTCCCTTGAGTTAATGAAAGAACTTATGCAAGAGCATAAAATAGAAAAGCGAGAG CATAAATTAGAGATACAAAAATTACTAGAAGATCATAAAAGTTTCTTAGAAGATTTTAGACCTCTTGCACGCGACGCAAA AGAATCTTTAAATACAAGTGCTAATATTTTAAACCAGTGTTCTATTCTTAAGGATAAAAATACCATTTTGGAGAAAAAAG TTAAGAATTTTGAGACAATGAGTGCAGCAGATAGACTATTTTCATACCTTTTTCCTCGTTATAACGATGCTATTTCCACA AGAAATATAACGCTTAAAGAACAAGAGCTTCTTAATAAATCTACGATAACTGATACAGAAATTGAAGCTGAAGGAAGAAA GTTAAAAGAACTAAAAAATAAGATAGAAAAATATTATCCACCAGTAGAGACAAAATAA
Upstream 100 bases:
>100_bases TGTTGTTTATCTAGATTAAGTAAGGTAAAGCGTAATAAAATACGGTTTTTATCTCATTTCAGAGAAACATTTTATTTTAA ATTTTATAGGAGTGTTAAAT
Downstream 100 bases:
>100_bases AAATTTTTGTTTTGGTTAATCTAAATTTGAAAAAAATTTCAAATTTAGATTAACTCAAGCTTGTCCAAACCTTGCTCAAT TAGCTATGAATCATTATCAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSINLNSSMCNPIDSLNQPKEVVWEENVCEMNNCSLTSENKISVIAKNMLPVEEEVIFTSFNCPITLSPFVDPVVDECGH TFEQEAIMQIYNRAIARGTPFTCPMDPSKILDVNKLVKNYNLASAQEEVEEFTKKYTSEKKTSLELMKELMQEHKIEKRE HKLEIQKLLEDHKSFLEDFRPLARDAKESLNTSANILNQCSILKDKNTILEKKVKNFETMSAADRLFSYLFPRYNDAIST RNITLKEQELLNKSTITDTEIEAEGRKLKELKNKIEKYYPPVETK
Sequences:
>Translated_285_residues MSINLNSSMCNPIDSLNQPKEVVWEENVCEMNNCSLTSENKISVIAKNMLPVEEEVIFTSFNCPITLSPFVDPVVDECGH TFEQEAIMQIYNRAIARGTPFTCPMDPSKILDVNKLVKNYNLASAQEEVEEFTKKYTSEKKTSLELMKELMQEHKIEKRE HKLEIQKLLEDHKSFLEDFRPLARDAKESLNTSANILNQCSILKDKNTILEKKVKNFETMSAADRLFSYLFPRYNDAIST RNITLKEQELLNKSTITDTEIEAEGRKLKELKNKIEKYYPPVETK >Mature_284_residues SINLNSSMCNPIDSLNQPKEVVWEENVCEMNNCSLTSENKISVIAKNMLPVEEEVIFTSFNCPITLSPFVDPVVDECGHT FEQEAIMQIYNRAIARGTPFTCPMDPSKILDVNKLVKNYNLASAQEEVEEFTKKYTSEKKTSLELMKELMQEHKIEKREH KLEIQKLLEDHKSFLEDFRPLARDAKESLNTSANILNQCSILKDKNTILEKKVKNFETMSAADRLFSYLFPRYNDAISTR NITLKEQELLNKSTITDTEIEAEGRKLKELKNKIEKYYPPVETK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32930; Mature: 32799
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSINLNSSMCNPIDSLNQPKEVVWEENVCEMNNCSLTSENKISVIAKNMLPVEEEVIFTS CCCCCCCHHCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHEEEE FNCPITLSPFVDPVVDECGHTFEQEAIMQIYNRAIARGTPFTCPMDPSKILDVNKLVKNY CCCCEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC NLASAQEEVEEFTKKYTSEKKTSLELMKELMQEHKIEKREHKLEIQKLLEDHKSFLEDFR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLARDAKESLNTSANILNQCSILKDKNTILEKKVKNFETMSAADRLFSYLFPRYNDAIST HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC RNITLKEQELLNKSTITDTEIEAEGRKLKELKNKIEKYYPPVETK CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SINLNSSMCNPIDSLNQPKEVVWEENVCEMNNCSLTSENKISVIAKNMLPVEEEVIFTS CCCCCCHHCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHEEEE FNCPITLSPFVDPVVDECGHTFEQEAIMQIYNRAIARGTPFTCPMDPSKILDVNKLVKNY CCCCEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHC NLASAQEEVEEFTKKYTSEKKTSLELMKELMQEHKIEKREHKLEIQKLLEDHKSFLEDFR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PLARDAKESLNTSANILNQCSILKDKNTILEKKVKNFETMSAADRLFSYLFPRYNDAIST HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC RNITLKEQELLNKSTITDTEIEAEGRKLKELKNKIEKYYPPVETK CCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA