Definition | Candidatus Protochlamydia amoebophila UWE25, complete genome. |
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Accession | NC_005861 |
Length | 2,414,465 |
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The map label for this gene is 46445682
Identifier: 46445682
GI number: 46445682
Start: 85501
End: 87096
Strand: Reverse
Name: 46445682
Synonym: pc0048
Alternate gene names: NA
Gene position: 87096-85501 (Counterclockwise)
Preceding gene: 46445683
Following gene: 46445680
Centisome position: 3.61
GC content: 33.4
Gene sequence:
>1596_bases TTGACTATTCATAATCTAAGGTTTACTCCTAAAATTACTTTCTCCAATCCAGCTACCTACTACTATGAATCGAATAACTG TTTAAAGTTCTCTGAACGTGTTAGTTTATTTTGCATAACAATCTTCCAGAGTTTCCTAAACCTATTTTTTGGTTATCTCA AAAAAGATCAGCTTCAAACTCCATGGAGAGAAAACTTTTGGAGCAGAAAAGAAATTACCATTCCCAAATTTATTACAAGT CGCCCTCCATCATCTGATATATCTTTAACAAGAATCCGCTCTCAGGAAACTATTAATAATCTTGAGTACGAAAACGAAGT TTTATTAGAACCTTCAAATACCCTAGAAGGAATTGAGGCATTTGCAATTCAATCTTCTAGTCTTTCACCTTTACCTCAAG TATTTAAAGTAAGATTTCAAAATAACACTTTTCTAAACATTACAAGTTCTCAAAAATCTTTGTTAATGGAAAAATCGCCC TATTTTAGGGTCCTTTGGTCGGGAAATTTTAAAGAAACTCTTCAAAATCCTCTCGTTTTGACACAAAAAGAAGAGTTTAC CAGTCTACTCTTTTGTCTAATGAATGCTAATTTTAAAGTTCCTGTGGAAGACATTACTTCTTTCATTCAGCTAGCAGATT ATTATCTACTGACAGATGTTGTGAAAAATTTAGAAGAACAGCTGATTGATGCCTATAAATCAGAGGAACTTGACTTATTT AATTTCAACGAAGAAAACCTAGCAAAATTAAGAGAATCCTTAAATTTCGCGCATCAATATCGCTTAAGTGCTTTAAAAAA TTATTTACAGCCCATAGTTGCAAGTTTATTATTAAACCAGACGCCTCATTTAGCAGAATTTAAAAAAATTTTAAATTACT TCTCAAATGAGATAGAAAAACTCAATTTTTCAGAAAATGCCCACTTGACCGATGCCCATCTCTTAGCGTTAAAAAATTGT AAAAATTTAAAAGCACTTCATCTTCAGGCCTGCCACAATCTAACTGACGATGGATTAGCAAGTTTGACATCCTTAACAAA TTTGCAATATTTGAATTTAAGCTGTTGCGATAAGCTCACCAATAAAGGATTAGCGCATTTTAAATCTTTAATAGCTTTAC AGTATTTGAACCTCAGTGGATGCGCTTTTATTACTGACGCAGGATTAGCGCATTTAAAACCCTTAGTAGCTTTACAGTAT TTGAACCTCAGTGGATGCGCTTTTATTACTGACGCAGGATTAGCGCATTTAAAACCCTTAGTAGCTTTACAGTATTTGAA CCTCAGTGGATGCGCTTTTATTACTGACGCAGGATTAGCGCATTTGACACCCTTAGTAACTTTAAAACATTTAGATCTGA GCTGGTGCAATAGTCTCACCAATGCTGGATTAGAACGTTTAGCATCCTTAGTGGCTTTACAACATTTAAATCTGAGCGGA TGCATTTATCTTACTGAAGCTGGGCTAACACATTTGACGTCCTTAACTAATTTACAGCAACTAAATTTGAATCATTGCGA ACATTTCGCTGATGTTAGATTTAAGTTAACGCATTTTAGAACTTTATTAGCTAATCCAAATTTAATTTTGATTTAA
Upstream 100 bases:
>100_bases AATTTCTTTCAAATTTAATTGGGTCTTTATTGCAATAATATTCACTCATATTTTATATTAAAAAATTAAATACATTATTT ATACAATTTGGATGGTGAAT
Downstream 100 bases:
>100_bases AAAACCATTCTTATAACGATCTGAATTAGCACATTTGACATCCTTAAAAGCTAAACTGTATCATAGAAATAGCTAAATTA TTGATGAAGTTCCTAAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 531; Mature: 530
Protein sequence:
>531_residues MTIHNLRFTPKITFSNPATYYYESNNCLKFSERVSLFCITIFQSFLNLFFGYLKKDQLQTPWRENFWSRKEITIPKFITS RPPSSDISLTRIRSQETINNLEYENEVLLEPSNTLEGIEAFAIQSSSLSPLPQVFKVRFQNNTFLNITSSQKSLLMEKSP YFRVLWSGNFKETLQNPLVLTQKEEFTSLLFCLMNANFKVPVEDITSFIQLADYYLLTDVVKNLEEQLIDAYKSEELDLF NFNEENLAKLRESLNFAHQYRLSALKNYLQPIVASLLLNQTPHLAEFKKILNYFSNEIEKLNFSENAHLTDAHLLALKNC KNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQY LNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNLSG CIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFRTLLANPNLILI
Sequences:
>Translated_531_residues MTIHNLRFTPKITFSNPATYYYESNNCLKFSERVSLFCITIFQSFLNLFFGYLKKDQLQTPWRENFWSRKEITIPKFITS RPPSSDISLTRIRSQETINNLEYENEVLLEPSNTLEGIEAFAIQSSSLSPLPQVFKVRFQNNTFLNITSSQKSLLMEKSP YFRVLWSGNFKETLQNPLVLTQKEEFTSLLFCLMNANFKVPVEDITSFIQLADYYLLTDVVKNLEEQLIDAYKSEELDLF NFNEENLAKLRESLNFAHQYRLSALKNYLQPIVASLLLNQTPHLAEFKKILNYFSNEIEKLNFSENAHLTDAHLLALKNC KNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQY LNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNLSG CIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFRTLLANPNLILI >Mature_530_residues TIHNLRFTPKITFSNPATYYYESNNCLKFSERVSLFCITIFQSFLNLFFGYLKKDQLQTPWRENFWSRKEITIPKFITSR PPSSDISLTRIRSQETINNLEYENEVLLEPSNTLEGIEAFAIQSSSLSPLPQVFKVRFQNNTFLNITSSQKSLLMEKSPY FRVLWSGNFKETLQNPLVLTQKEEFTSLLFCLMNANFKVPVEDITSFIQLADYYLLTDVVKNLEEQLIDAYKSEELDLFN FNEENLAKLRESLNFAHQYRLSALKNYLQPIVASLLLNQTPHLAEFKKILNYFSNEIEKLNFSENAHLTDAHLLALKNCK NLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLTNKGLAHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYL NLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNLSGC IYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFRTLLANPNLILI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI284447308, Length=328, Percent_Identity=30.4878048780488, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI22748931, Length=209, Percent_Identity=33.0143540669856, Blast_Score=103, Evalue=5e-22, Organism=Homo sapiens, GI161333852, Length=248, Percent_Identity=29.4354838709677, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI6912466, Length=230, Percent_Identity=28.695652173913, Blast_Score=93, Evalue=6e-19, Organism=Homo sapiens, GI161333854, Length=254, Percent_Identity=28.740157480315, Blast_Score=93, Evalue=7e-19, Organism=Homo sapiens, GI284447314, Length=314, Percent_Identity=30.5732484076433, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI296531375, Length=357, Percent_Identity=28.8515406162465, Blast_Score=86, Evalue=9e-17, Organism=Homo sapiens, GI27734755, Length=232, Percent_Identity=33.6206896551724, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI289666746, Length=228, Percent_Identity=35.9649122807018, Blast_Score=79, Evalue=9e-15, Organism=Caenorhabditis elegans, GI25151694, Length=216, Percent_Identity=32.4074074074074, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI25151696, Length=216, Percent_Identity=32.4074074074074, Blast_Score=76, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6322549, Length=110, Percent_Identity=36.3636363636364, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI17647819, Length=228, Percent_Identity=31.5789473684211, Blast_Score=102, Evalue=8e-22, Organism=Drosophila melanogaster, GI21357913, Length=227, Percent_Identity=32.5991189427313, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24662818, Length=211, Percent_Identity=37.4407582938389, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI161076545, Length=318, Percent_Identity=27.6729559748428, Blast_Score=76, Evalue=5e-14, Organism=Drosophila melanogaster, GI161076547, Length=318, Percent_Identity=27.6729559748428, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI161076549, Length=318, Percent_Identity=27.0440251572327, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI24652783, Length=318, Percent_Identity=27.6729559748428, Blast_Score=75, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60320; Mature: 60189
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIHNLRFTPKITFSNPATYYYESNNCLKFSERVSLFCITIFQSFLNLFFGYLKKDQLQT CCEECEEECEEEEECCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PWRENFWSRKEITIPKFITSRPPSSDISLTRIRSQETINNLEYENEVLLEPSNTLEGIEA CHHHCCCCCCCCCCCHHHCCCCCCCCCEEEECCCHHHHHCCCCCCEEEECCCCHHHHHHH FAIQSSSLSPLPQVFKVRFQNNTFLNITSSQKSLLMEKSPYFRVLWSGNFKETLQNPLVL HEECCCCCCCCHHHHEEEECCCEEEEEECCHHHHHHCCCCCEEEEECCCHHHHHCCCEEE TQKEEFTSLLFCLMNANFKVPVEDITSFIQLADYYLLTDVVKNLEEQLIDAYKSEELDLF ECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE NFNEENLAKLRESLNFAHQYRLSALKNYLQPIVASLLLNQTPHLAEFKKILNYFSNEIEK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC LNFSENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLT CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECHHHHHHHH NKGLAHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPL HHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH VALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNLSG HHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC CIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFRTLLANPNLILI EEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEC >Mature Secondary Structure TIHNLRFTPKITFSNPATYYYESNNCLKFSERVSLFCITIFQSFLNLFFGYLKKDQLQT CEECEEECEEEEECCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PWRENFWSRKEITIPKFITSRPPSSDISLTRIRSQETINNLEYENEVLLEPSNTLEGIEA CHHHCCCCCCCCCCCHHHCCCCCCCCCEEEECCCHHHHHCCCCCCEEEECCCCHHHHHHH FAIQSSSLSPLPQVFKVRFQNNTFLNITSSQKSLLMEKSPYFRVLWSGNFKETLQNPLVL HEECCCCCCCCHHHHEEEECCCEEEEEECCHHHHHHCCCCCEEEEECCCHHHHHCCCEEE TQKEEFTSLLFCLMNANFKVPVEDITSFIQLADYYLLTDVVKNLEEQLIDAYKSEELDLF ECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE NFNEENLAKLRESLNFAHQYRLSALKNYLQPIVASLLLNQTPHLAEFKKILNYFSNEIEK CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC LNFSENAHLTDAHLLALKNCKNLKALHLQACHNLTDDGLASLTSLTNLQYLNLSCCDKLT CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCEEECHHHHHHHH NKGLAHFKSLIALQYLNLSGCAFITDAGLAHLKPLVALQYLNLSGCAFITDAGLAHLKPL HHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHH VALQYLNLSGCAFITDAGLAHLTPLVTLKHLDLSWCNSLTNAGLERLASLVALQHLNLSG HHHHHCCCCCCEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC CIYLTEAGLTHLTSLTNLQQLNLNHCEHFADVRFKLTHFRTLLANPNLILI EEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA