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The map label for this gene is pal [C]

Identifier: 45659294

GI number: 45659294

Start: 4253491

End: 4254777

Strand: Reverse

Name: pal [C]

Synonym: LIC13479

Alternate gene names: 45659294

Gene position: 4254777-4253491 (Counterclockwise)

Preceding gene: 45659295

Following gene: 45659293

Centisome position: 99.48

GC content: 31.93

Gene sequence:

>1287_bases
ATGAGCCTAAAAAATAAAAATTATGTTTTATCAAAAAAAACCATATTGATTCTATTTTTAGTATATTTTGTTTTTATAAT
TTCTTTTTTTTCTATTTACCCTCAGGATTTAAGTATAAATCAAAATCCTAAACCAGAAAAGTTAAAAGGTTCTATCAATA
CGAGTCTCAATGAGTTTGGAATCAGTCTTACTGATGACGGAAATATTTTATATTTCTATTCTAAAAGACAAAATTCAAAT
TATACAGACATTTATAAGTCAACTCGAACGAAAGATGAATGGACACAAGGAGAGGAAATTGAAGTTCTAAATTCAAACTT
TGACGACCAAAGTCCTTTCATTTTAAACCGAGAAGAAGGAATTCTTTTTTCATCTAATAGAGATGGTGCGACTGAATTCC
AATTTGCAAATGGAAAAATCGGAGTTTCTAGAGATATTTATTTTTCTAAAAAAATAAATTCTTCTTGGACAAAACCGGTT
CTTCTTCCTAGAGCCGTGAATACGGAAGAAATCGAAGAAAATCCGTTTCTATTTAATAATAGATTGTATTTTACCCGTTA
TCCTTTTGGGCAAGTTTCAGAAGCGGACATTTTCGTTTCTGTTTATAAAAATAACACTTGGGAAAAAGCAATGAGCCTCC
CTGATCCGATTAACACCGTTTATTCGGAAATTGCGGCTACAATTAGTAAAGATGGAAAGACGATTTATTTTTCTTCTAAC
CGTCCGGGGGGTTTTGGCGGTTATGATTTGTATAAGTCTACTTTACTTGAAAACGGAAATTATTCCGAACCGATTAATCT
TGGACCCGAAATTAACACTACCGGAGATGAGGCTTTTTTTCTGGAAACAAACGATAGAAAGACATTCTATTTTTGTAGAA
GGAAAGAACGCGATTATGATATTTATTCTATCGTTTCTAATCCGTTTCAAGAACTAGAAAAAGGAAAATCTATTTCTTTG
GATAGTATCCATTTTTCTTTGGGCTCTTATGAAATTCTCGAAAATTCTTTTTCAATTTTAGATAATTTGAATTCTTATCT
TAAGGAAAATTTAAATATAAAAATCAAAATCACCGGCCATACCGATCTTAATGGAGATTCCCAGGACAACCTTATTCTCA
GCCGTAATCGTGCAAATGCAGTAAAGGATTATTTAGTTAAAAGGGGAATCGATTCTCAAAGAATTATCACGGATGGAAAA
GGTAGTTCGGAGCCAATTGTTCCTATGAAAAATCCAGAGACGGATTATAAAAATAGAAGAACCGAATTTCAGATTATCAG
TCGTTAG

Upstream 100 bases:

>100_bases
TAAATATATTCTTCTGATAAAAGAATAGAACGGTAAGAAATTGAAGAATATAAATAGATTATAGTCTAACTTTATAATAA
AATTTTCCGAAAGTATTATT

Downstream 100 bases:

>100_bases
AAATTTATGATTCTAATTTAAAATGCTCTGGAAAAAAACAAGGATCGACCTATTCTTTGTTTCATGTTCGAGAAGAATTT
TTTTTATCTACTTTTGATTT

Product: peptidoglycan-associated cytoplasmic membrane protein

Products: NA

Alternate protein names: Outer Membrane Protein; Ompa/Motb Domain Protein; OmpA Family Protein; OmpA/MotB Domain-Containing Protein; OmpA/MotB; OmpA Family Outer Membrane Protein; OmpA Domain-Containing Protein; Peptidoglycan-Associated Lipoprotein; OmpA/MotB Family Outer Membrane Protein; Ompa Domain Protein; OmpA-Family Protein; OmpA Domain Protein; WD40 Domain-Containing Protein Beta Propeller; WD40 Domain-Containing Protein; Peptidoglycan Associated Lipoprotein; Outer Membrane Protein OmpA Family Protein; YceI Like Family; WD40 Domain Protein Beta Propeller; Surface Antigen Protein; Outer Membrane Lipoprotein; Exported OmpA Domain-Containing Protein; Inner Membrane Lipoprotein YiaD; Outer Membrane Protein-Like Peptidoglycan-Associatedprotein; Beta Propeller Repeat-Containing Protein; Outer Membrane Protein A; Outer Membrane Protein Porin F; Peptidoglycan-Associated Outer Membrane Protein; Outer Membrane Porin F; OmpA Family Peptidoglycan-Associated Lipoprotein

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MSLKNKNYVLSKKTILILFLVYFVFIISFFSIYPQDLSINQNPKPEKLKGSINTSLNEFGISLTDDGNILYFYSKRQNSN
YTDIYKSTRTKDEWTQGEEIEVLNSNFDDQSPFILNREEGILFSSNRDGATEFQFANGKIGVSRDIYFSKKINSSWTKPV
LLPRAVNTEEIEENPFLFNNRLYFTRYPFGQVSEADIFVSVYKNNTWEKAMSLPDPINTVYSEIAATISKDGKTIYFSSN
RPGGFGGYDLYKSTLLENGNYSEPINLGPEINTTGDEAFFLETNDRKTFYFCRRKERDYDIYSIVSNPFQELEKGKSISL
DSIHFSLGSYEILENSFSILDNLNSYLKENLNIKIKITGHTDLNGDSQDNLILSRNRANAVKDYLVKRGIDSQRIITDGK
GSSEPIVPMKNPETDYKNRRTEFQIISR

Sequences:

>Translated_428_residues
MSLKNKNYVLSKKTILILFLVYFVFIISFFSIYPQDLSINQNPKPEKLKGSINTSLNEFGISLTDDGNILYFYSKRQNSN
YTDIYKSTRTKDEWTQGEEIEVLNSNFDDQSPFILNREEGILFSSNRDGATEFQFANGKIGVSRDIYFSKKINSSWTKPV
LLPRAVNTEEIEENPFLFNNRLYFTRYPFGQVSEADIFVSVYKNNTWEKAMSLPDPINTVYSEIAATISKDGKTIYFSSN
RPGGFGGYDLYKSTLLENGNYSEPINLGPEINTTGDEAFFLETNDRKTFYFCRRKERDYDIYSIVSNPFQELEKGKSISL
DSIHFSLGSYEILENSFSILDNLNSYLKENLNIKIKITGHTDLNGDSQDNLILSRNRANAVKDYLVKRGIDSQRIITDGK
GSSEPIVPMKNPETDYKNRRTEFQIISR
>Mature_427_residues
SLKNKNYVLSKKTILILFLVYFVFIISFFSIYPQDLSINQNPKPEKLKGSINTSLNEFGISLTDDGNILYFYSKRQNSNY
TDIYKSTRTKDEWTQGEEIEVLNSNFDDQSPFILNREEGILFSSNRDGATEFQFANGKIGVSRDIYFSKKINSSWTKPVL
LPRAVNTEEIEENPFLFNNRLYFTRYPFGQVSEADIFVSVYKNNTWEKAMSLPDPINTVYSEIAATISKDGKTIYFSSNR
PGGFGGYDLYKSTLLENGNYSEPINLGPEINTTGDEAFFLETNDRKTFYFCRRKERDYDIYSIVSNPFQELEKGKSISLD
SIHFSLGSYEILENSFSILDNLNSYLKENLNIKIKITGHTDLNGDSQDNLILSRNRANAVKDYLVKRGIDSQRIITDGKG
SSEPIVPMKNPETDYKNRRTEFQIISR

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Attached To The Outer Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49223; Mature: 49091

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKNKNYVLSKKTILILFLVYFVFIISFFSIYPQDLSINQNPKPEKLKGSINTSLNEFG
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHCC
ISLTDDGNILYFYSKRQNSNYTDIYKSTRTKDEWTQGEEIEVLNSNFDDQSPFILNREEG
EEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCC
ILFSSNRDGATEFQFANGKIGVSRDIYFSKKINSSWTKPVLLPRAVNTEEIEENPFLFNN
EEEECCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCEEEECCCCHHHHCCCCEEEEC
RLYFTRYPFGQVSEADIFVSVYKNNTWEKAMSLPDPINTVYSEIAATISKDGKTIYFSSN
EEEEEECCCCCCCCCEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCC
RPGGFGGYDLYKSTLLENGNYSEPINLGPEINTTGDEAFFLETNDRKTFYFCRRKERDYD
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCH
IYSIVSNPFQELEKGKSISLDSIHFSLGSYEILENSFSILDNLNSYLKENLNIKIKITGH
HHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
TDLNGDSQDNLILSRNRANAVKDYLVKRGIDSQRIITDGKGSSEPIVPMKNPETDYKNRR
CCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHCCC
TEFQIISR
CEEEEECC
>Mature Secondary Structure 
SLKNKNYVLSKKTILILFLVYFVFIISFFSIYPQDLSINQNPKPEKLKGSINTSLNEFG
CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCHHHCC
ISLTDDGNILYFYSKRQNSNYTDIYKSTRTKDEWTQGEEIEVLNSNFDDQSPFILNREEG
EEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCEEEECCCC
ILFSSNRDGATEFQFANGKIGVSRDIYFSKKINSSWTKPVLLPRAVNTEEIEENPFLFNN
EEEECCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCEEEECCCCHHHHCCCCEEEEC
RLYFTRYPFGQVSEADIFVSVYKNNTWEKAMSLPDPINTVYSEIAATISKDGKTIYFSSN
EEEEEECCCCCCCCCEEEEEEECCCCHHHHCCCCCHHHHHHHHHHHHHCCCCCEEEECCC
RPGGFGGYDLYKSTLLENGNYSEPINLGPEINTTGDEAFFLETNDRKTFYFCRRKERDYD
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCH
IYSIVSNPFQELEKGKSISLDSIHFSLGSYEILENSFSILDNLNSYLKENLNIKIKITGH
HHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
TDLNGDSQDNLILSRNRANAVKDYLVKRGIDSQRIITDGKGSSEPIVPMKNPETDYKNRR
CCCCCCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHCCC
TEFQIISR
CEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA