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The map label for this gene is 45659232

Identifier: 45659232

GI number: 45659232

Start: 4189213

End: 4190844

Strand: Reverse

Name: 45659232

Synonym: LIC13415

Alternate gene names: NA

Gene position: 4190844-4189213 (Counterclockwise)

Preceding gene: 45659244

Following gene: 45659231

Centisome position: 97.98

GC content: 30.39

Gene sequence:

>1632_bases
ATGTATAAAACCCCAACTTCTAATTTTAGAATTTTTGTACTAGTTTTTGGCGTTTTTATTTCTTTTTTTCCGGTTTTTGC
TCATCCCGAATCGGTATTACTTACTCAAGAAACCTCTTCAAAAAACATAAGTTCCCTTATAGAATATAGATATAGGGGGC
AACAATTTGCAGGTTGTTCTCCGGATCATATAGATGGTTTGGAAGATTTAGAATGGCATCAAATTCCGACCGAGGTTTTA
CGTGTAAAAAGAACACCTTTCGGGAATTGGCTGAGATTTAGTGTTAAAAATTCCGAATCTACGATCCAAAGTAGAATTCT
TTTACTCGGATGGTTAAATGTTCCAGATACACAGCTTTGTTTTTTTGATAAAAGCGGAAAGTTCGTTTCTGCGCGATCTG
GTTATTCAAATGATATAGAAGATGAAAAAATTCTCACGAACTTACCTCATTTTAGAATAGATTTAGAACCTAACGAAAAT
AGAATTTTCTATCTTTTTGTTTTATCGAACGAGGATATTAATTATCGAATTCAAATTATGGGTTTAGAGGAATTTGAACT
TCGTAAAAGACTTAGATCGATCATTTCTTATTCAATTATAGGAATCGTAGCGATTGCGATTTTTTATTCTCTTTTTGGTT
ATTATCGATTTAGAAATTTTACTTTCGTTTCTTTTTTATTGTATATTATTTCTGTTCTTGTTACATTTTATTTTCTTCAT
GGACGCACTTTTGCAGAAATTGCGGGAAATACAAATAATCTATTTCGGCACAGTTATTTCTTATTTCTTGGAATTTCTTA
CGTGTTTTTATTTTTATATTTATTTTCGGTAGATAAAATTAACCAAAGGAAAGTTTATCGTTCAGTGTTTTTTTGGATCT
CTGGAGCTTTAGGAGTTTTATATTTTCTAATTCCTCTTTTGCATTCTTGGTATGATCATAGGATTTTGCTTTTAGTAGTT
ACGGTAGGTCTTTCCTCTTTTTACTTTATTCGGGTACACTATCAATTTTTTGGTTCTAACTCTTCGATTGGATTTCTTTA
TACCGCATCTTGGACCGTGTTTCTAGTATTAAATATTTATAAGACTATTTTTCATTTTGATTTTTATCCATTTAACTATT
TTTCAGTGTTTGGGGTTGTACTATTTTTACCTTTTCATTCTATTTTAATAAGTTTTTATTTGAATGAGTTTTTGAATCGG
AAAAAGTCTCAGAAACTTGAAGAGAAAGATTCGATACAAACTAGAAAATCTACAACTAGTTCTTTAAATGTGGTAGAAAT
TGTTCAGGGTGTTAAGAATCTTTTGGAAAAGAAAAAAGTATTTCTTCAAAAATCTTTAAAAGAAGAAAACGTAGCTAAAG
AACTTGGTTTAAGTCTTCATCAACTTTCCGAAATCATTAACGTAGAATTTGGTAATAATTTTCCTTCTTTAATCAATCAA
TATAGAATTGAAGAAGCTAAAAAACTTCTTCTGGATCATCCAGATAAGACAACTGCTGAAATCGGAAGCAGCGCGGGGTT
TAGTTCTAAATCTGCGTTTTATATGGAATTTAAAAAGTTTACCGGAACCAATCCGAACGCATACCGTAGAAAAGAACTTA
AAAACGAATCTACATTTCGTAAAAATTTTTAA

Upstream 100 bases:

>100_bases
AGAAATTGAAATTTTTTTACAGAAAAAATAAAAACTAAATTTGCTTTGGAAATATTTTTTAAAACGATGATATTGTTAAA
TTCAAGGTTAATGAAACGGA

Downstream 100 bases:

>100_bases
TTCTAATTTTTAGTATATTCATAAAATTTAATACTTTGAATGAATTTTCGTGTTTATCCTTTGTAATATTATATTACTTA
GGGGGCTTGAATCGATTTCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MYKTPTSNFRIFVLVFGVFISFFPVFAHPESVLLTQETSSKNISSLIEYRYRGQQFAGCSPDHIDGLEDLEWHQIPTEVL
RVKRTPFGNWLRFSVKNSESTIQSRILLLGWLNVPDTQLCFFDKSGKFVSARSGYSNDIEDEKILTNLPHFRIDLEPNEN
RIFYLFVLSNEDINYRIQIMGLEEFELRKRLRSIISYSIIGIVAIAIFYSLFGYYRFRNFTFVSFLLYIISVLVTFYFLH
GRTFAEIAGNTNNLFRHSYFLFLGISYVFLFLYLFSVDKINQRKVYRSVFFWISGALGVLYFLIPLLHSWYDHRILLLVV
TVGLSSFYFIRVHYQFFGSNSSIGFLYTASWTVFLVLNIYKTIFHFDFYPFNYFSVFGVVLFLPFHSILISFYLNEFLNR
KKSQKLEEKDSIQTRKSTTSSLNVVEIVQGVKNLLEKKKVFLQKSLKEENVAKELGLSLHQLSEIINVEFGNNFPSLINQ
YRIEEAKKLLLDHPDKTTAEIGSSAGFSSKSAFYMEFKKFTGTNPNAYRRKELKNESTFRKNF

Sequences:

>Translated_543_residues
MYKTPTSNFRIFVLVFGVFISFFPVFAHPESVLLTQETSSKNISSLIEYRYRGQQFAGCSPDHIDGLEDLEWHQIPTEVL
RVKRTPFGNWLRFSVKNSESTIQSRILLLGWLNVPDTQLCFFDKSGKFVSARSGYSNDIEDEKILTNLPHFRIDLEPNEN
RIFYLFVLSNEDINYRIQIMGLEEFELRKRLRSIISYSIIGIVAIAIFYSLFGYYRFRNFTFVSFLLYIISVLVTFYFLH
GRTFAEIAGNTNNLFRHSYFLFLGISYVFLFLYLFSVDKINQRKVYRSVFFWISGALGVLYFLIPLLHSWYDHRILLLVV
TVGLSSFYFIRVHYQFFGSNSSIGFLYTASWTVFLVLNIYKTIFHFDFYPFNYFSVFGVVLFLPFHSILISFYLNEFLNR
KKSQKLEEKDSIQTRKSTTSSLNVVEIVQGVKNLLEKKKVFLQKSLKEENVAKELGLSLHQLSEIINVEFGNNFPSLINQ
YRIEEAKKLLLDHPDKTTAEIGSSAGFSSKSAFYMEFKKFTGTNPNAYRRKELKNESTFRKNF
>Mature_543_residues
MYKTPTSNFRIFVLVFGVFISFFPVFAHPESVLLTQETSSKNISSLIEYRYRGQQFAGCSPDHIDGLEDLEWHQIPTEVL
RVKRTPFGNWLRFSVKNSESTIQSRILLLGWLNVPDTQLCFFDKSGKFVSARSGYSNDIEDEKILTNLPHFRIDLEPNEN
RIFYLFVLSNEDINYRIQIMGLEEFELRKRLRSIISYSIIGIVAIAIFYSLFGYYRFRNFTFVSFLLYIISVLVTFYFLH
GRTFAEIAGNTNNLFRHSYFLFLGISYVFLFLYLFSVDKINQRKVYRSVFFWISGALGVLYFLIPLLHSWYDHRILLLVV
TVGLSSFYFIRVHYQFFGSNSSIGFLYTASWTVFLVLNIYKTIFHFDFYPFNYFSVFGVVLFLPFHSILISFYLNEFLNR
KKSQKLEEKDSIQTRKSTTSSLNVVEIVQGVKNLLEKKKVFLQKSLKEENVAKELGLSLHQLSEIINVEFGNNFPSLINQ
YRIEEAKKLLLDHPDKTTAEIGSSAGFSSKSAFYMEFKKFTGTNPNAYRRKELKNESTFRKNF

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63650; Mature: 63650

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYKTPTSNFRIFVLVFGVFISFFPVFAHPESVLLTQETSSKNISSLIEYRYRGQQFAGCS
CCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCC
PDHIDGLEDLEWHQIPTEVLRVKRTPFGNWLRFSVKNSESTIQSRILLLGWLNVPDTQLC
CCCCCCCCCCHHHHCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHEEEEEECCCCCCEEE
FFDKSGKFVSARSGYSNDIEDEKILTNLPHFRIDLEPNENRIFYLFVLSNEDINYRIQIM
EEECCCCEEEECCCCCCCCCHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEE
GLEEFELRKRLRSIISYSIIGIVAIAIFYSLFGYYRFRNFTFVSFLLYIISVLVTFYFLH
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GRTFAEIAGNTNNLFRHSYFLFLGISYVFLFLYLFSVDKINQRKVYRSVFFWISGALGVL
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
YFLIPLLHSWYDHRILLLVVTVGLSSFYFIRVHYQFFGSNSSIGFLYTASWTVFLVLNIY
HHHHHHHHHHHCCHHHHHHHHHHHCCEEEEEEEEEEECCCCCEEEEEECHHHHHHHHHHH
KTIFHFDFYPFNYFSVFGVVLFLPFHSILISFYLNEFLNRKKSQKLEEKDSIQTRKSTTS
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SLNVVEIVQGVKNLLEKKKVFLQKSLKEENVAKELGLSLHQLSEIINVEFGNNFPSLINQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHH
YRIEEAKKLLLDHPDKTTAEIGSSAGFSSKSAFYMEFKKFTGTNPNAYRRKELKNESTFR
HHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHEEHHHHCCCCCCHHHHHHHCCCCHHH
KNF
CCC
>Mature Secondary Structure
MYKTPTSNFRIFVLVFGVFISFFPVFAHPESVLLTQETSSKNISSLIEYRYRGQQFAGCS
CCCCCCCCCEEHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCC
PDHIDGLEDLEWHQIPTEVLRVKRTPFGNWLRFSVKNSESTIQSRILLLGWLNVPDTQLC
CCCCCCCCCCHHHHCCHHHHHHHCCCCCCEEEEEECCCHHHHHHHEEEEEECCCCCCEEE
FFDKSGKFVSARSGYSNDIEDEKILTNLPHFRIDLEPNENRIFYLFVLSNEDINYRIQIM
EEECCCCEEEECCCCCCCCCHHHHHHCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEE
GLEEFELRKRLRSIISYSIIGIVAIAIFYSLFGYYRFRNFTFVSFLLYIISVLVTFYFLH
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
GRTFAEIAGNTNNLFRHSYFLFLGISYVFLFLYLFSVDKINQRKVYRSVFFWISGALGVL
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
YFLIPLLHSWYDHRILLLVVTVGLSSFYFIRVHYQFFGSNSSIGFLYTASWTVFLVLNIY
HHHHHHHHHHHCCHHHHHHHHHHHCCEEEEEEEEEEECCCCCEEEEEECHHHHHHHHHHH
KTIFHFDFYPFNYFSVFGVVLFLPFHSILISFYLNEFLNRKKSQKLEEKDSIQTRKSTTS
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
SLNVVEIVQGVKNLLEKKKVFLQKSLKEENVAKELGLSLHQLSEIINVEFGNNFPSLINQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHH
YRIEEAKKLLLDHPDKTTAEIGSSAGFSSKSAFYMEFKKFTGTNPNAYRRKELKNESTFR
HHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHEEHHHHCCCCCCHHHHHHHCCCCHHH
KNF
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA