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The map label for this gene is sdpR [H]

Identifier: 45659225

GI number: 45659225

Start: 4178745

End: 4179098

Strand: Reverse

Name: sdpR [H]

Synonym: LIC13408

Alternate gene names: 45659225

Gene position: 4179098-4178745 (Counterclockwise)

Preceding gene: 45659226

Following gene: 45659224

Centisome position: 97.71

GC content: 31.64

Gene sequence:

>354_bases
ATGCTTTATTTTTTATATATGAATGCTTTTGCTGCTCTTGCAGATGATACAAGAAGGGAAATTGTGAGATTGGTGGCCAA
AAACGGCAAACTTACCTCCACTGAGATAAGCCAAAATTTTAAAATGACTCCGCCCGCTATTTCACAACATTTAAAGGTAT
TAAAAGAAGCAAAGGTTCTTCATATGAAAAAGGAGGCACAAAGACGTATTTATAGTCTTAATAATTCAGGAATTGATGAA
ATGGAAGATTGGTTACTTGATATTAAAAATCTATGGAATAAACGCTTAGATAACTTGGATAAATATCTTTTAAAAATAAA
GAAGGAAAAATCCCATGATAAGAAATTACGCTGA

Upstream 100 bases:

>100_bases
GTAAGGTTTGGACGCTTAGATCGCTTTTTTAGGAATTTTCATGTTAAAAATAGGCTAAATTTTTAAGAACATTAATTTAA
GTATTGACTTAATTAAGTAA

Downstream 100 bases:

>100_bases
AACAATCGTTGAGAGCAACAAAGTCATTTATAAGAGATATCTAGATGTACCGGTAGATCTTGCCTTTGAGGTATGGTCAT
CTCAAGAGCATCTTTCACAG

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MLYFLYMNAFAALADDTRREIVRLVAKNGKLTSTEISQNFKMTPPAISQHLKVLKEAKVLHMKKEAQRRIYSLNNSGIDE
MEDWLLDIKNLWNKRLDNLDKYLLKIKKEKSHDKKLR

Sequences:

>Translated_117_residues
MLYFLYMNAFAALADDTRREIVRLVAKNGKLTSTEISQNFKMTPPAISQHLKVLKEAKVLHMKKEAQRRIYSLNNSGIDE
MEDWLLDIKNLWNKRLDNLDKYLLKIKKEKSHDKKLR
>Mature_117_residues
MLYFLYMNAFAALADDTRREIVRLVAKNGKLTSTEISQNFKMTPPAISQHLKVLKEAKVLHMKKEAQRRIYSLNNSGIDE
MEDWLLDIKNLWNKRLDNLDKYLLKIKKEKSHDKKLR

Specific function: Represses the transcription of the sdpIR operon and of several other operons that probably contribute to delaying commitment to sporulation [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 13862; Mature: 13862

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYFLYMNAFAALADDTRREIVRLVAKNGKLTSTEISQNFKMTPPAISQHLKVLKEAKVL
CEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH
HMKKEAQRRIYSLNNSGIDEMEDWLLDIKNLWNKRLDNLDKYLLKIKKEKSHDKKLR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLYFLYMNAFAALADDTRREIVRLVAKNGKLTSTEISQNFKMTPPAISQHLKVLKEAKVL
CEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHH
HMKKEAQRRIYSLNNSGIDEMEDWLLDIKNLWNKRLDNLDKYLLKIKKEKSHDKKLR
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]