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The map label for this gene is 45659209

Identifier: 45659209

GI number: 45659209

Start: 4155708

End: 4157330

Strand: Reverse

Name: 45659209

Synonym: LIC13392

Alternate gene names: NA

Gene position: 4157330-4155708 (Counterclockwise)

Preceding gene: 45659210

Following gene: 45659207

Centisome position: 97.2

GC content: 38.69

Gene sequence:

>1623_bases
TTGAAATCCAAGTTATCGGCAATCGTCATCTGTTCGATTTTATTTTTTGCAACGGATGCGTTTGCACAAAAGAGATACGG
ACTTATTTTCGGAACTAACTATACGGGTAATAAGGCCGGAATTCCAGAACTCAATCTTTGTGAAGCAGATGCAAGTTATC
TGAATGATGAAATTCGAAAAGTGGGAAACTTCGACGAAGTTAAAATCGTTCTCGGAAAAGAAGTTACAAAAGATAACATA
GAAAAAGAAATTAAGGCCTTAGCAAAAAAAGCGGGTGATAACGATACCGTTCTGCTTTATTTTTCCGGACACGGTGCTTT
TCAAAGAGACGCTTCTGCAAAAAATGGGATGAGAAATCTTATTATTTGTTATGACAGACCTCACCTTCCGGATGATGAAC
TGAATAAATACTTAGAAAAAATAAAATCTCCTAAGACAGTGTTTATCTTCGATTGTTGTTTTTCTGGCGGGATCGCTAAA
AAAGGAAAATCAACTCGAGGTTCTGCTGATGTTCCGATTCCCGAAGGAAGTAACGGGACTGTAAAACAAGACGCAGAAGA
TTTTTTCTTTCAAGATAAAGCGATCATTTCTTCTGCAGACGATAACCAAACTGCGATTGAAGTTGGTGGAAGTATCAATC
ACGGGATTTTTACTTATAACTTTGGTAGGGCACTTGGTTCTGCAGATTTAAATAAAGATAACGTAGTTACGGCTCTGGAA
GCATTTTTCAAATCAAAAGAAGAAACCGTTCAGATGGCAAAGAAATTCCAGCATGAACAAGTGCCTCAAATTTCAGGAAA
TGCTTCCGGTATTTTTCTTTCGGGCAAAAAAAATCCGGAACCTCCTAAACCAGTGGATCCTCCAAAACCTCCTGCTCCTT
CTGCAGAACCTGAACCAGACCCAGTCAAACCAGATCCTTCGCAGCCGGTGGTAACTCCGGAAGAACCTCCTGTGGTTCCT
ACAAATGAAAGAGGGGATTTAGTTTTAAAAACAACGATTATTCAGGATCGTGCTTACGGTCTTTCGGATCTTCCTCCCGA
TATTTTAATTTTCGCTAAAAAGAAAAGAAAAGGGAATCGAAACGTTAAGGTTTATATAGACGATCAAGAATTTTCTTCTA
CTGTAACCGCTACTTCTTCTAATTTTTGGGGCGCTGTTAAAAGACAAGGGCAGTTGATTCCTGGTAATATCTACACGATC
ACGCTGAGCAAGGTTCCGGCCGGAGTTCATAAAATTACGATTAAGGCGGACGATTATCCAGAAATTCAAGAAACGTTTGC
GGTTCTTCCAAATAAGAAAAACGAACTTCCAATCAATGTTTCTATGAGTGGTTTTGGAGCTATTCAAGGAAAAGTTTTTT
ACAAAACCTTAGATAATCCTGTAAGCAATCAGCCGATTTTTATGCCTACGATTTCGAGCGTTACTGGAATTCAAAAATTG
AATACAGACAGTGAAGGAAATTTCTGGTTCACAAATCTCAAGCCAGGAGATTATGAAATCAAGGCTTCTTTTGCAGAGGA
TTTGAATCTCAACAATTCAATGATCAACGTAAGAGAAGGGGACGTAACTAAGGTGGACGTCATTTTGAATGTAAAGATGC
CTTCCACTAAAACGAAATACTAA

Upstream 100 bases:

>100_bases
TAAATTTAAGAGTCTCGATTCTTAACTTAAAAAAATAATGACAAAAGGATTTCTTTTGTTACCTTGATTCCATTCTAAAT
GAATCCTTAGGAGGCCAGGT

Downstream 100 bases:

>100_bases
AGTATTGGTATTTCGTTTTTAAGTGAAATGAAAAAGCCCGCCAACACAGCGGGCTTTTTGTTTTAAAATTTATTTTTAAA
AATTTAACTTTTTATAATAG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Peptidase; Polysaccharide Deacetylase

Number of amino acids: Translated: 540; Mature: 540

Protein sequence:

>540_residues
MKSKLSAIVICSILFFATDAFAQKRYGLIFGTNYTGNKAGIPELNLCEADASYLNDEIRKVGNFDEVKIVLGKEVTKDNI
EKEIKALAKKAGDNDTVLLYFSGHGAFQRDASAKNGMRNLIICYDRPHLPDDELNKYLEKIKSPKTVFIFDCCFSGGIAK
KGKSTRGSADVPIPEGSNGTVKQDAEDFFFQDKAIISSADDNQTAIEVGGSINHGIFTYNFGRALGSADLNKDNVVTALE
AFFKSKEETVQMAKKFQHEQVPQISGNASGIFLSGKKNPEPPKPVDPPKPPAPSAEPEPDPVKPDPSQPVVTPEEPPVVP
TNERGDLVLKTTIIQDRAYGLSDLPPDILIFAKKKRKGNRNVKVYIDDQEFSSTVTATSSNFWGAVKRQGQLIPGNIYTI
TLSKVPAGVHKITIKADDYPEIQETFAVLPNKKNELPINVSMSGFGAIQGKVFYKTLDNPVSNQPIFMPTISSVTGIQKL
NTDSEGNFWFTNLKPGDYEIKASFAEDLNLNNSMINVREGDVTKVDVILNVKMPSTKTKY

Sequences:

>Translated_540_residues
MKSKLSAIVICSILFFATDAFAQKRYGLIFGTNYTGNKAGIPELNLCEADASYLNDEIRKVGNFDEVKIVLGKEVTKDNI
EKEIKALAKKAGDNDTVLLYFSGHGAFQRDASAKNGMRNLIICYDRPHLPDDELNKYLEKIKSPKTVFIFDCCFSGGIAK
KGKSTRGSADVPIPEGSNGTVKQDAEDFFFQDKAIISSADDNQTAIEVGGSINHGIFTYNFGRALGSADLNKDNVVTALE
AFFKSKEETVQMAKKFQHEQVPQISGNASGIFLSGKKNPEPPKPVDPPKPPAPSAEPEPDPVKPDPSQPVVTPEEPPVVP
TNERGDLVLKTTIIQDRAYGLSDLPPDILIFAKKKRKGNRNVKVYIDDQEFSSTVTATSSNFWGAVKRQGQLIPGNIYTI
TLSKVPAGVHKITIKADDYPEIQETFAVLPNKKNELPINVSMSGFGAIQGKVFYKTLDNPVSNQPIFMPTISSVTGIQKL
NTDSEGNFWFTNLKPGDYEIKASFAEDLNLNNSMINVREGDVTKVDVILNVKMPSTKTKY
>Mature_540_residues
MKSKLSAIVICSILFFATDAFAQKRYGLIFGTNYTGNKAGIPELNLCEADASYLNDEIRKVGNFDEVKIVLGKEVTKDNI
EKEIKALAKKAGDNDTVLLYFSGHGAFQRDASAKNGMRNLIICYDRPHLPDDELNKYLEKIKSPKTVFIFDCCFSGGIAK
KGKSTRGSADVPIPEGSNGTVKQDAEDFFFQDKAIISSADDNQTAIEVGGSINHGIFTYNFGRALGSADLNKDNVVTALE
AFFKSKEETVQMAKKFQHEQVPQISGNASGIFLSGKKNPEPPKPVDPPKPPAPSAEPEPDPVKPDPSQPVVTPEEPPVVP
TNERGDLVLKTTIIQDRAYGLSDLPPDILIFAKKKRKGNRNVKVYIDDQEFSSTVTATSSNFWGAVKRQGQLIPGNIYTI
TLSKVPAGVHKITIKADDYPEIQETFAVLPNKKNELPINVSMSGFGAIQGKVFYKTLDNPVSNQPIFMPTISSVTGIQKL
NTDSEGNFWFTNLKPGDYEIKASFAEDLNLNNSMINVREGDVTKVDVILNVKMPSTKTKY

Specific function: Unknown

COG id: COG4249

COG function: function code R; Uncharacterized protein containing caspase domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59232; Mature: 59232

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKLSAIVICSILFFATDAFAQKRYGLIFGTNYTGNKAGIPELNLCEADASYLNDEIRK
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHH
VGNFDEVKIVLGKEVTKDNIEKEIKALAKKAGDNDTVLLYFSGHGAFQRDASAKNGMRNL
HCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHCCCCEE
IICYDRPHLPDDELNKYLEKIKSPKTVFIFDCCFSGGIAKKGKSTRGSADVPIPEGSNGT
EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
VKQDAEDFFFQDKAIISSADDNQTAIEVGGSINHGIFTYNFGRALGSADLNKDNVVTALE
CCCCHHHHHHCCCCEEECCCCCCEEEEECCCCCCCEEEEECCHHHCCCCCCCCHHHHHHH
AFFKSKEETVQMAKKFQHEQVPQISGNASGIFLSGKKNPEPPKPVDPPKPPAPSAEPEPD
HHHCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
PVKPDPSQPVVTPEEPPVVPTNERGDLVLKTTIIQDRAYGLSDLPPDILIFAKKKRKGNR
CCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCC
NVKVYIDDQEFSSTVTATSSNFWGAVKRQGQLIPGNIYTITLSKVPAGVHKITIKADDYP
EEEEEECCCCCCCEEEECCCCCCHHHHHCCEECCCCEEEEEEECCCCCEEEEEEECCCCC
EIQETFAVLPNKKNELPINVSMSGFGAIQGKVFYKTLDNPVSNQPIFMPTISSVTGIQKL
HHHHHHHHCCCCCCCCEEEEEECCCCEECCEEEEEECCCCCCCCCEEEECHHHHHHHHHC
NTDSEGNFWFTNLKPGDYEIKASFAEDLNLNNSMINVREGDVTKVDVILNVKMPSTKTKY
CCCCCCCEEEECCCCCCEEEEEEHHHCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCCC
>Mature Secondary Structure
MKSKLSAIVICSILFFATDAFAQKRYGLIFGTNYTGNKAGIPELNLCEADASYLNDEIRK
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHH
VGNFDEVKIVLGKEVTKDNIEKEIKALAKKAGDNDTVLLYFSGHGAFQRDASAKNGMRNL
HCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHCCCCEE
IICYDRPHLPDDELNKYLEKIKSPKTVFIFDCCFSGGIAKKGKSTRGSADVPIPEGSNGT
EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
VKQDAEDFFFQDKAIISSADDNQTAIEVGGSINHGIFTYNFGRALGSADLNKDNVVTALE
CCCCHHHHHHCCCCEEECCCCCCEEEEECCCCCCCEEEEECCHHHCCCCCCCCHHHHHHH
AFFKSKEETVQMAKKFQHEQVPQISGNASGIFLSGKKNPEPPKPVDPPKPPAPSAEPEPD
HHHCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
PVKPDPSQPVVTPEEPPVVPTNERGDLVLKTTIIQDRAYGLSDLPPDILIFAKKKRKGNR
CCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCC
NVKVYIDDQEFSSTVTATSSNFWGAVKRQGQLIPGNIYTITLSKVPAGVHKITIKADDYP
EEEEEECCCCCCCEEEECCCCCCHHHHHCCEECCCCEEEEEEECCCCCEEEEEEECCCCC
EIQETFAVLPNKKNELPINVSMSGFGAIQGKVFYKTLDNPVSNQPIFMPTISSVTGIQKL
HHHHHHHHCCCCCCCCEEEEEECCCCEECCEEEEEECCCCCCCCCEEEECHHHHHHHHHC
NTDSEGNFWFTNLKPGDYEIKASFAEDLNLNNSMINVREGDVTKVDVILNVKMPSTKTKY
CCCCCCCEEEECCCCCCEEEEEEHHHCCCCCCCEEEEECCCCEEEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA