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The map label for this gene is 45659109

Identifier: 45659109

GI number: 45659109

Start: 4031940

End: 4033073

Strand: Reverse

Name: 45659109

Synonym: LIC13288

Alternate gene names: NA

Gene position: 4033073-4031940 (Counterclockwise)

Preceding gene: 45659110

Following gene: 45659107

Centisome position: 94.29

GC content: 30.6

Gene sequence:

>1134_bases
ATGAAATTTTCAGGATTAACCAATCATATTTATAAAGACAGGGATTATCTTACTCGAAATAGGGCGTTCCATCTTTTCAT
TTTTAATGTGGTGTCGCTTTTATTGGGTTTATCTGTGAATTTTTATGTTTGGTTTGTGAAAGGTGATCTATTACGTCCTG
GTTTTTTAATCATCATGCTTGCATCTGCAGTCTCTCTGTTTTTTTTATTGAGAAAAAAATTTGAATTGGCTCTCAGAATT
ATTTTGATCGCAAGTGTAATTGCTGTTAGCGTTGGTTGGTTTTTTGGACTTTCTCAGGGAAATTCTCCTTTGGACGAAGG
GAATAAAAATATTGTTTTAGCTATATTTATTATGATTTTCTTATATTTCGCAAATGTAAAGCGAACTCTTCTAATTGCGG
TTTACTGTTTTGTTTTGATTTTTATGGAAGAGCTTTTAATGCAACAAATTCATGAATCTATTCACATGGCTGATCGAATC
GCTCTATTTTTCATGTTTTCTGTAATTTCGATTATCGCCGTAAGAACTCTTCATGGATCGATTGAAGAAAAGAACGAATT
GATACAAGAAATTCATCATAGAGTTAGAAATAATCTTCAGGTTCTTTCCGGTTTAGTAGAAATGCATAGTGATTCTGATC
AAGGGAATCTTAGGAATATATTATCTGATTTTCAAAATCGTATATTAGCAATATCTGAAGTTCATAATTATTTATATAAG
TCCGAAAATTATTTCGACATAGATTTTTCGGAAGTGATTGAAAGAATCATTGCAAATCTCATTCATAAATTTGGTAAACA
ATCTGTAAAAATAGAAAATTTAACGGAACAGATTTTTTTAAGAATCGAATATGCGATTCCTTGTGCTATGATTTTTAGTG
AACTTTTATCTAATTCTTTAAAACATGCGTTTTCTTCGGATATGGGGAAAATTGTCATTCGGTTTCATAAAGAAGGAAAT
AAGTATCGTCTTCAAATTGAAGATAATGGTTCTGGAATATCTGATTCTAAAACTTGGTTGAAACCAAAAACTTCTGGTTT
TAAATTGATTCAACTTTTGACCAGACAAATAAAAGGTGATTTTCAAATTCTTTCGGATTCTGGTTCCATTGCTGTACTTG
AATTTAACGCTTAA

Upstream 100 bases:

>100_bases
TTACGAATTGTTTTGTAAAAAAAATATTTTCTCTTCAAGTCTGATTAAATAGGGTGAGTTTTTTTGTTTCTCGGGTAGGC
GGAAAGAAGAGGGTAAGCGG

Downstream 100 bases:

>100_bases
ACATATTCAAAATTTAGAATATTTATTTAAACACTTATATTAAGGTTGTTGAAAAATTCCATAGTGAAGATTTGTAAAAT
TGCTTCAATTGTCCGTTTCA

Product: histidine kinase sensor protein

Products: NA

Alternate protein names: Sensory Transduction Histidine Kinase; Two-Component Sensor Histidine Kinase; Histidine Kinase Sensor Protein; Histidine Kinase Family; Sensor Histidine Kinase; Multisensor Signal Transduction Histidine Kinase; PAS Sensor Protein; Sensory Transduction Regulatory Protein; Signal-Transducing Histidine Kinase; Sensory Box Histidine Kinase; PAS Fold Family; Histidine Kinase Dimerisation/Phosphoacceptor; Two Component System Sensor Histidine Kinase; Two-Component System Sensor Histidine Kinase; Histidine Kinase/Response Regulator Hybrid Protein; Two-Component Hybrid Sensor And Regulator; Ethylene Response Sensor Protein; Response Regulator; Sensory Transduction Protein Kinase; Histidine Kinase Of A Two-Component Regulator System; Two Component Sensor Histidine Kinase; Two-Component Sensor Protein; Multi-Sensor Signal Transduction Multi-Kinase; Periplasmic Sensor Signal Transduction Histidine Kinase; Two-Component Histidine Kinase; Sensor Histidine Kinase And Response Regulator Protein

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKFSGLTNHIYKDRDYLTRNRAFHLFIFNVVSLLLGLSVNFYVWFVKGDLLRPGFLIIMLASAVSLFFLLRKKFELALRI
ILIASVIAVSVGWFFGLSQGNSPLDEGNKNIVLAIFIMIFLYFANVKRTLLIAVYCFVLIFMEELLMQQIHESIHMADRI
ALFFMFSVISIIAVRTLHGSIEEKNELIQEIHHRVRNNLQVLSGLVEMHSDSDQGNLRNILSDFQNRILAISEVHNYLYK
SENYFDIDFSEVIERIIANLIHKFGKQSVKIENLTEQIFLRIEYAIPCAMIFSELLSNSLKHAFSSDMGKIVIRFHKEGN
KYRLQIEDNGSGISDSKTWLKPKTSGFKLIQLLTRQIKGDFQILSDSGSIAVLEFNA

Sequences:

>Translated_377_residues
MKFSGLTNHIYKDRDYLTRNRAFHLFIFNVVSLLLGLSVNFYVWFVKGDLLRPGFLIIMLASAVSLFFLLRKKFELALRI
ILIASVIAVSVGWFFGLSQGNSPLDEGNKNIVLAIFIMIFLYFANVKRTLLIAVYCFVLIFMEELLMQQIHESIHMADRI
ALFFMFSVISIIAVRTLHGSIEEKNELIQEIHHRVRNNLQVLSGLVEMHSDSDQGNLRNILSDFQNRILAISEVHNYLYK
SENYFDIDFSEVIERIIANLIHKFGKQSVKIENLTEQIFLRIEYAIPCAMIFSELLSNSLKHAFSSDMGKIVIRFHKEGN
KYRLQIEDNGSGISDSKTWLKPKTSGFKLIQLLTRQIKGDFQILSDSGSIAVLEFNA
>Mature_377_residues
MKFSGLTNHIYKDRDYLTRNRAFHLFIFNVVSLLLGLSVNFYVWFVKGDLLRPGFLIIMLASAVSLFFLLRKKFELALRI
ILIASVIAVSVGWFFGLSQGNSPLDEGNKNIVLAIFIMIFLYFANVKRTLLIAVYCFVLIFMEELLMQQIHESIHMADRI
ALFFMFSVISIIAVRTLHGSIEEKNELIQEIHHRVRNNLQVLSGLVEMHSDSDQGNLRNILSDFQNRILAISEVHNYLYK
SENYFDIDFSEVIERIIANLIHKFGKQSVKIENLTEQIFLRIEYAIPCAMIFSELLSNSLKHAFSSDMGKIVIRFHKEGN
KYRLQIEDNGSGISDSKTWLKPKTSGFKLIQLLTRQIKGDFQILSDSGSIAVLEFNA

Specific function: Unknown

COG id: COG3920

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43362; Mature: 43362

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFSGLTNHIYKDRDYLTRNRAFHLFIFNVVSLLLGLSVNFYVWFVKGDLLRPGFLIIML
CCCCCHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHH
ASAVSLFFLLRKKFELALRIILIASVIAVSVGWFFGLSQGNSPLDEGNKNIVLAIFIMIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
LYFANVKRTLLIAVYCFVLIFMEELLMQQIHESIHMADRIALFFMFSVISIIAVRTLHGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IEEKNELIQEIHHRVRNNLQVLSGLVEMHSDSDQGNLRNILSDFQNRILAISEVHNYLYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
SENYFDIDFSEVIERIIANLIHKFGKQSVKIENLTEQIFLRIEYAIPCAMIFSELLSNSL
CCCEECCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
KHAFSSDMGKIVIRFHKEGNKYRLQIEDNGSGISDSKTWLKPKTSGFKLIQLLTRQIKGD
HHHHHCCHHHEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
FQILSDSGSIAVLEFNA
EEEEECCCCEEEEEECC
>Mature Secondary Structure
MKFSGLTNHIYKDRDYLTRNRAFHLFIFNVVSLLLGLSVNFYVWFVKGDLLRPGFLIIML
CCCCCHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHH
ASAVSLFFLLRKKFELALRIILIASVIAVSVGWFFGLSQGNSPLDEGNKNIVLAIFIMIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
LYFANVKRTLLIAVYCFVLIFMEELLMQQIHESIHMADRIALFFMFSVISIIAVRTLHGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IEEKNELIQEIHHRVRNNLQVLSGLVEMHSDSDQGNLRNILSDFQNRILAISEVHNYLYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
SENYFDIDFSEVIERIIANLIHKFGKQSVKIENLTEQIFLRIEYAIPCAMIFSELLSNSL
CCCEECCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
KHAFSSDMGKIVIRFHKEGNKYRLQIEDNGSGISDSKTWLKPKTSGFKLIQLLTRQIKGD
HHHHHCCHHHEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
FQILSDSGSIAVLEFNA
EEEEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA