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The map label for this gene is ygcF [C]

Identifier: 45659043

GI number: 45659043

Start: 3953858

End: 3954589

Strand: Reverse

Name: ygcF [C]

Synonym: LIC13221

Alternate gene names: 45659043

Gene position: 3954589-3953858 (Counterclockwise)

Preceding gene: 45659045

Following gene: 45659042

Centisome position: 92.46

GC content: 37.98

Gene sequence:

>732_bases
TTGTACTCGAAAGAACCCATGGACAATCTGAAAACCTCTGTACATGAAATTTATCTTTCTCTTTCTGGAGAAGGAATTTC
AACCGGCATTCCTACTATATTTGTTCGAATGGCGGGATGTTCTCTTCGTTGTGGAATGACTGTCGGAAGAAAGTTATGGT
GTGATACTCCATACGCGTTGTCTCCAAAAGCTGGAGAAGAAATGAGCGTAAATCAAGTCTTGGATAAAATCCAAGAGCTA
AGTGCTGTAAATATTCAGATTCTACTAACGGGAGGAGAACCTCTGGAAGGAAGAAATAGAGAATTTAGCATCACTTTAGG
AAACGAAATTTTTAGAATTAGAAATTCTTCCGGTTTCTATCCAAGACCCAGGGTAGAAACCAACGGAGCCGAGTCGATCG
AAGGAATGGATCAATTCGTTTTTACGTTGGATTATAAACTTCCTGGTTCCGGAATGGAAGACCGAATGAATTTGAAAAAC
TTGGAAATTTATAAGGAAAGAAAAAATCCTTTGGACGAGATTAAATTTGTGATTCGAGATAAAAATGATTTCGAAAGATG
TTTAGAAATAATCGAAAAACACGCGTTAGTTGGAAATCTCTTGGCGTCCCCAGTTCAAGGAGAATTATCTCCTGAAATTC
TTGCCGAATGGATAAAATATTCTCTTGGTTCAGGACTTAGACTTTCAATACAAACTCATAAATATATCTGGGGCGATCAA
AGGGGAGTTTAG

Upstream 100 bases:

>100_bases
AAAATGTAGCTCCGAGGGTTGACCGCAAAGGGTAGTTTCTAAATTCTGGAATTTGGATTTTTATTTTTTTGCGAACTTAT
CTTTGGTCTAAAGAAAAATC

Downstream 100 bases:

>100_bases
TTGGAAGAAGTTTTACAGCTCAGCCTAGACTTTGAACCCAAATCAAGTTCTGGTTATCGAGGGGATTTTTGTTACTTAAC
GAATTCTCCCGAATCCGGAA

Product: Fe-S oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MYSKEPMDNLKTSVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGRKLWCDTPYALSPKAGEEMSVNQVLDKIQEL
SAVNIQILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRPRVETNGAESIEGMDQFVFTLDYKLPGSGMEDRMNLKN
LEIYKERKNPLDEIKFVIRDKNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSLGSGLRLSIQTHKYIWGDQ
RGV

Sequences:

>Translated_243_residues
MYSKEPMDNLKTSVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGRKLWCDTPYALSPKAGEEMSVNQVLDKIQEL
SAVNIQILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRPRVETNGAESIEGMDQFVFTLDYKLPGSGMEDRMNLKN
LEIYKERKNPLDEIKFVIRDKNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSLGSGLRLSIQTHKYIWGDQ
RGV
>Mature_243_residues
MYSKEPMDNLKTSVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGRKLWCDTPYALSPKAGEEMSVNQVLDKIQEL
SAVNIQILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFYPRPRVETNGAESIEGMDQFVFTLDYKLPGSGMEDRMNLKN
LEIYKERKNPLDEIKFVIRDKNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSLGSGLRLSIQTHKYIWGDQ
RGV

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 27410; Mature: 27410

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYSKEPMDNLKTSVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGRKLWCDTPYAL
CCCCCHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCEEECCCCCCC
SPKAGEEMSVNQVLDKIQELSAVNIQILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFY
CCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCC
PRPRVETNGAESIEGMDQFVFTLDYKLPGSGMEDRMNLKNLEIYKERKNPLDEIKFVIRD
CCCCCCCCCCHHHHHHHEEEEEEEEECCCCCCHHHCCCCHHHHHHHHCCCHHHHHEECCC
KNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSLGSGLRLSIQTHKYIWGDQ
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECEEECCCC
RGV
CCC
>Mature Secondary Structure
MYSKEPMDNLKTSVHEIYLSLSGEGISTGIPTIFVRMAGCSLRCGMTVGRKLWCDTPYAL
CCCCCHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHCCCCEEECCCCCCEEECCCCCCC
SPKAGEEMSVNQVLDKIQELSAVNIQILLTGGEPLEGRNREFSITLGNEIFRIRNSSGFY
CCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCEEEEEECCCCCC
PRPRVETNGAESIEGMDQFVFTLDYKLPGSGMEDRMNLKNLEIYKERKNPLDEIKFVIRD
CCCCCCCCCCHHHHHHHEEEEEEEEECCCCCCHHHCCCCHHHHHHHHCCCHHHHHEECCC
KNDFERCLEIIEKHALVGNLLASPVQGELSPEILAEWIKYSLGSGLRLSIQTHKYIWGDQ
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECEEECCCC
RGV
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]