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The map label for this gene is atpC

Identifier: 45657127

GI number: 45657127

Start: 1535580

End: 1535963

Strand: Direct

Name: atpC

Synonym: LIC11244

Alternate gene names: 45657127

Gene position: 1535580-1535963 (Clockwise)

Preceding gene: 45657126

Following gene: 45657128

Centisome position: 35.9

GC content: 38.28

Gene sequence:

>384_bases
ATGTCCGCGAATAAACTCAAAGTGTCCGTGATTTCCCCTGAAAAGATTCTCTATAAAGGGGAAGTGGATTCTCTGATCGT
TCCAGGCAGCGAAGGATTTTTTGGAATCCTTCCGAATCACGCTCCTTTGGTTGCCACTTTGGGAATTGGTATTTTAGAAA
TTCGAAAAGGAGAAAAGTTAAAAGTATTGTCCGTAGAAGGAGGATTTGTCGAAATAAAAGATAATTCTATTAGCATTCTT
ACGGATCACGGTGCTCTCAAAGAAGATATCGATTTAGAAGTCGAAAAAAAGAATTTAGCAGAAGCGGAAAAACTTCCTCC
ATCCGATTCTAAAAATCTTTTCCTCCAAAAAACAAAAACTCGAATTTTAGTCGCATCCCGCTAA

Upstream 100 bases:

>100_bases
TTTCTGGAAACTATGATCACCTTCCAGAACAAGCTTTTTATATGGTTGGTTCTATAGACGATGCCATCGAAAAAGCAAAA
GGTTACAAAGGATAACGCGA

Downstream 100 bases:

>100_bases
CTTTTAGGGGTGTGAATTTCCGAAAATAGTAGCAAGGATTTCCTTCTCTCCGAATACAATGGAGATCTGGGAACAATTAT
TTATGAAAACTACGATTCGT

Product: F0F1 ATP synthase subunit epsilon

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F1 sector epsilon subunit; F-ATPase epsilon subunit

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MSANKLKVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGILEIRKGEKLKVLSVEGGFVEIKDNSISIL
TDHGALKEDIDLEVEKKNLAEAEKLPPSDSKNLFLQKTKTRILVASR

Sequences:

>Translated_127_residues
MSANKLKVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGILEIRKGEKLKVLSVEGGFVEIKDNSISIL
TDHGALKEDIDLEVEKKNLAEAEKLPPSDSKNLFLQKTKTRILVASR
>Mature_126_residues
SANKLKVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGILEIRKGEKLKVLSVEGGFVEIKDNSISILT
DHGALKEDIDLEVEKKNLAEAEKLPPSDSKNLFLQKTKTRILVASR

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane

COG id: COG0355

COG function: function code C; F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase epsilon chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPE_LEPIC (Q72SX8)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_001213.1
- ProteinModelPortal:   Q72SX8
- SMR:   Q72SX8
- GeneID:   2770603
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC11244
- HOGENOM:   HBG663981
- OMA:   DIVTPQK
- ProtClustDB:   PRK13444
- BioCyc:   LINT267671:LIC_11244-MONOMER
- HAMAP:   MF_00530
- InterPro:   IPR001469
- InterPro:   IPR020546
- Gene3D:   G3DSA:2.60.15.10
- PANTHER:   PTHR13822
- ProDom:   PD000944
- TIGRFAMs:   TIGR01216

Pfam domain/function: PF02823 ATP-synt_DE_N; SSF51344 ATPsynt_DE

EC number: 3.6.3.14

Molecular weight: Translated: 13791; Mature: 13660

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANKLKVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGILEIRKGEKL
CCCCEEEEEEECCCCEEEECCCCEEEECCCCCEEEECCCCCCEEEECCCEEEEECCCCEE
KVLSVEGGFVEIKDNSISILTDHGALKEDIDLEVEKKNLAEAEKLPPSDSKNLFLQKTKT
EEEEECCCEEEEECCCEEEEECCCCCCCCCCEEECCCCCCHHHCCCCCCCCCEEEEECCE
RILVASR
EEEEEEC
>Mature Secondary Structure 
SANKLKVSVISPEKILYKGEVDSLIVPGSEGFFGILPNHAPLVATLGIGILEIRKGEKL
CCCEEEEEEECCCCEEEECCCCEEEECCCCCEEEECCCCCCEEEECCCEEEEECCCCEE
KVLSVEGGFVEIKDNSISILTDHGALKEDIDLEVEKKNLAEAEKLPPSDSKNLFLQKTKT
EEEEECCCEEEEECCCEEEEECCCCCCCCCCEEECCCCCCHHHCCCCCCCCCEEEEECCE
RILVASR
EEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA