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The map label for this gene is atpD

Identifier: 45657126

GI number: 45657126

Start: 1534171

End: 1535574

Strand: Direct

Name: atpD

Synonym: LIC11243

Alternate gene names: 45657126

Gene position: 1534171-1535574 (Clockwise)

Preceding gene: 45657125

Following gene: 45657127

Centisome position: 35.87

GC content: 42.95

Gene sequence:

>1404_bases
ATGAATAAAGGTAAAATCAAGCAGATCATCGGTTCCGTTTTGGATATCGAATTTGAAAACGGAGAACTTCCAGAAATTTA
TAACGCATTGGAAATCGAAACGAACGTTTCCGGAAAAAAGGAAACGATTATCGCCGAGGTTCAAACCCATATCGGAGGAA
AAGCGGTGCGTGCGATTGCACTTTCTTCTACAGATGGTTTGATCCGAGGACAAGAAGTTTCCAATACAGGAAAACCGATC
AGTGTTCCTGTAGGAGACGCAACACTCGGAAGAATTTTTAACGTTCTAGGTAAAACCATCGACGAAGGTCCCGCGATTAC
CGTAAAGGAAACCCGTCCGATTCACAGAGCCGCTCCTTCTTTCGACGAGCTCACTTCTAAAACCGAAGTATTTGAAACCG
GAATTAAGGTGATCGATCTTCTCGCTCCTTATATCAAGGGTGGAAAGACAGGACTCTTCGGAGGTGCTGGAGTAGGTAAG
ACAGTTCTCATTCAGGAACTCATCAACAATATCGCAAAACAACACGGTGGATTTTCCGTGTTTGCTGGAGTAGGAGAAAG
AACCCGCGAAGGAAACGATCTCTGGAGAGAGATGAAGGAATCTGGAGTAATTGATAAAACAGTTCTTTGTTACGGTCAGA
TGAACGAACCTCCTGGTGCTCGTTTAAGAGTTGCGTTATCCGCTCTTACAATGGCGGAACATTTTCGTGATTCTATTGGA
ACCGACGTTCTTCTTTTCGTAGATAATATATTTCGTTTTTCGCAAGCTGGTTCGGAAGTTTCTGCGCTTCTCGGAAGAAT
GCCTTCTGCTGTGGGTTACCAACCTACACTTTCTACCGAAATGGGTGCGCTTCAAGAAAGAATTACATCTACTAAAAAAG
GATCAATCACTTCTGTTCAGGCGATTTACGTTCCTGCGGACGACTTGACCGACCCGGCTCCTGCAAACGCGTTTGCTCAC
TTGGACGCAACCACGGTTCTTTCTCGTGCTATTTCCGATAAAGGAATTTATCCTGCAGTGGATCCTCTGGATTCTACTTC
CAGAGTAATGAATGCTCAGGTTCTGGGAGAAGAACACTATTTAGTCGCTCGGGAAGTTCAGAGAATTCTGCAAAGATATA
AAGACTTACAAGATATTATTGCCATTTTGGGAATGGATGAACTTTCTGAAGACGATAAAGTGCTCGTAGCTAGAGCGCGA
AAAATAGAAAAATTCCTTTCTCAACCTTTTCATGTGGCGGAAGTTTTTACAGGAGCTCCTGGAAAATACGTAAAACTTGC
GGATACGGTTCGTTCTTTTAAAGAAGTGATTTCTGGAAACTATGATCACCTTCCAGAACAAGCTTTTTATATGGTTGGTT
CTATAGACGATGCCATCGAAAAAGCAAAAGGTTACAAAGGATAA

Upstream 100 bases:

>100_bases
CCCGCGGATATAACCGCGTTAGACAGGCAAAAATCACTCAAGAAATTTCTGAGATTGTTGCCGGAGCGGATTCACTGAAC
TAAGTATTGGAGCGACTTGG

Downstream 100 bases:

>100_bases
CGCGAATGTCCGCGAATAAACTCAAAGTGTCCGTGATTTCCCCTGAAAAGATTCTCTATAAAGGGGAAGTGGATTCTCTG
ATCGTTCCAGGCAGCGAAGG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MNKGKIKQIIGSVLDIEFENGELPEIYNALEIETNVSGKKETIIAEVQTHIGGKAVRAIALSSTDGLIRGQEVSNTGKPI
SVPVGDATLGRIFNVLGKTIDEGPAITVKETRPIHRAAPSFDELTSKTEVFETGIKVIDLLAPYIKGGKTGLFGGAGVGK
TVLIQELINNIAKQHGGFSVFAGVGERTREGNDLWREMKESGVIDKTVLCYGQMNEPPGARLRVALSALTMAEHFRDSIG
TDVLLFVDNIFRFSQAGSEVSALLGRMPSAVGYQPTLSTEMGALQERITSTKKGSITSVQAIYVPADDLTDPAPANAFAH
LDATTVLSRAISDKGIYPAVDPLDSTSRVMNAQVLGEEHYLVAREVQRILQRYKDLQDIIAILGMDELSEDDKVLVARAR
KIEKFLSQPFHVAEVFTGAPGKYVKLADTVRSFKEVISGNYDHLPEQAFYMVGSIDDAIEKAKGYKG

Sequences:

>Translated_467_residues
MNKGKIKQIIGSVLDIEFENGELPEIYNALEIETNVSGKKETIIAEVQTHIGGKAVRAIALSSTDGLIRGQEVSNTGKPI
SVPVGDATLGRIFNVLGKTIDEGPAITVKETRPIHRAAPSFDELTSKTEVFETGIKVIDLLAPYIKGGKTGLFGGAGVGK
TVLIQELINNIAKQHGGFSVFAGVGERTREGNDLWREMKESGVIDKTVLCYGQMNEPPGARLRVALSALTMAEHFRDSIG
TDVLLFVDNIFRFSQAGSEVSALLGRMPSAVGYQPTLSTEMGALQERITSTKKGSITSVQAIYVPADDLTDPAPANAFAH
LDATTVLSRAISDKGIYPAVDPLDSTSRVMNAQVLGEEHYLVAREVQRILQRYKDLQDIIAILGMDELSEDDKVLVARAR
KIEKFLSQPFHVAEVFTGAPGKYVKLADTVRSFKEVISGNYDHLPEQAFYMVGSIDDAIEKAKGYKG
>Mature_467_residues
MNKGKIKQIIGSVLDIEFENGELPEIYNALEIETNVSGKKETIIAEVQTHIGGKAVRAIALSSTDGLIRGQEVSNTGKPI
SVPVGDATLGRIFNVLGKTIDEGPAITVKETRPIHRAAPSFDELTSKTEVFETGIKVIDLLAPYIKGGKTGLFGGAGVGK
TVLIQELINNIAKQHGGFSVFAGVGERTREGNDLWREMKESGVIDKTVLCYGQMNEPPGARLRVALSALTMAEHFRDSIG
TDVLLFVDNIFRFSQAGSEVSALLGRMPSAVGYQPTLSTEMGALQERITSTKKGSITSVQAIYVPADDLTDPAPANAFAH
LDATTVLSRAISDKGIYPAVDPLDSTSRVMNAQVLGEEHYLVAREVQRILQRYKDLQDIIAILGMDELSEDDKVLVARAR
KIEKFLSQPFHVAEVFTGAPGKYVKLADTVRSFKEVISGNYDHLPEQAFYMVGSIDDAIEKAKGYKG

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=465, Percent_Identity=67.5268817204301, Blast_Score=645, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=325, Percent_Identity=27.0769230769231, Blast_Score=121, Evalue=2e-27,
Organism=Homo sapiens, GI19913428, Length=370, Percent_Identity=27.027027027027, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI19913426, Length=390, Percent_Identity=26.1538461538462, Blast_Score=115, Evalue=8e-26,
Organism=Homo sapiens, GI50345984, Length=384, Percent_Identity=26.5625, Blast_Score=99, Evalue=1e-20,
Organism=Homo sapiens, GI4757810, Length=384, Percent_Identity=26.5625, Blast_Score=99, Evalue=1e-20,
Organism=Escherichia coli, GI1790170, Length=463, Percent_Identity=67.8185745140389, Blast_Score=640, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=383, Percent_Identity=30.5483028720627, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1790172, Length=314, Percent_Identity=26.7515923566879, Blast_Score=104, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI25144756, Length=466, Percent_Identity=66.3090128755365, Blast_Score=626, Evalue=1e-180,
Organism=Caenorhabditis elegans, GI17565854, Length=318, Percent_Identity=28.3018867924528, Blast_Score=125, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17510931, Length=361, Percent_Identity=27.7008310249307, Blast_Score=124, Evalue=1e-28,
Organism=Caenorhabditis elegans, GI17570191, Length=354, Percent_Identity=26.271186440678, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI71988080, Length=367, Percent_Identity=27.2479564032698, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71988063, Length=367, Percent_Identity=27.2479564032698, Blast_Score=105, Evalue=5e-23,
Organism=Caenorhabditis elegans, GI71988074, Length=330, Percent_Identity=26.0606060606061, Blast_Score=84, Evalue=2e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=461, Percent_Identity=68.9804772234273, Blast_Score=645, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=383, Percent_Identity=27.6762402088773, Blast_Score=119, Evalue=1e-27,
Organism=Saccharomyces cerevisiae, GI6319370, Length=416, Percent_Identity=25.4807692307692, Blast_Score=97, Evalue=7e-21,
Organism=Saccharomyces cerevisiae, GI6320016, Length=253, Percent_Identity=25.6916996047431, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24638766, Length=466, Percent_Identity=67.1673819742489, Blast_Score=632, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=466, Percent_Identity=63.7339055793991, Blast_Score=591, Evalue=1e-169,
Organism=Drosophila melanogaster, GI20129479, Length=330, Percent_Identity=26.3636363636364, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24583992, Length=327, Percent_Identity=27.5229357798165, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI281361666, Length=362, Percent_Identity=27.6243093922652, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24646341, Length=362, Percent_Identity=27.6243093922652, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI17136796, Length=362, Percent_Identity=27.6243093922652, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24583988, Length=324, Percent_Identity=26.8518518518519, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24583986, Length=324, Percent_Identity=26.8518518518519, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24583984, Length=324, Percent_Identity=26.8518518518519, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24658560, Length=425, Percent_Identity=27.2941176470588, Blast_Score=102, Evalue=7e-22,
Organism=Drosophila melanogaster, GI24638768, Length=96, Percent_Identity=47.9166666666667, Blast_Score=92, Evalue=8e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50566; Mature: 50566

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKGKIKQIIGSVLDIEFENGELPEIYNALEIETNVSGKKETIIAEVQTHIGGKAVRAIA
CCCCHHHHHHHHHHEEEECCCCCHHHHHHEEEECCCCCCHHHHHHHHHHHCCCHHHHEEE
LSSTDGLIRGQEVSNTGKPISVPVGDATLGRIFNVLGKTIDEGPAITVKETRPIHRAAPS
EECCCCCEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHCCCC
FDELTSKTEVFETGIKVIDLLAPYIKGGKTGLFGGAGVGKTVLIQELINNIAKQHGGFSV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
FAGVGERTREGNDLWREMKESGVIDKTVLCYGQMNEPPGARLRVALSALTMAEHFRDSIG
EECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
TDVLLFVDNIFRFSQAGSEVSALLGRMPSAVGYQPTLSTEMGALQERITSTKKGSITSVQ
CCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
AIYVPADDLTDPAPANAFAHLDATTVLSRAISDKGIYPAVDPLDSTSRVMNAQVLGEEHY
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHH
LVAREVQRILQRYKDLQDIIAILGMDELSEDDKVLVARARKIEKFLSQPFHVAEVFTGAP
HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCC
GKYVKLADTVRSFKEVISGNYDHLPEQAFYMVGSIDDAIEKAKGYKG
CCEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHCCCCC
>Mature Secondary Structure
MNKGKIKQIIGSVLDIEFENGELPEIYNALEIETNVSGKKETIIAEVQTHIGGKAVRAIA
CCCCHHHHHHHHHHEEEECCCCCHHHHHHEEEECCCCCCHHHHHHHHHHHCCCHHHHEEE
LSSTDGLIRGQEVSNTGKPISVPVGDATLGRIFNVLGKTIDEGPAITVKETRPIHRAAPS
EECCCCCEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHCCCC
FDELTSKTEVFETGIKVIDLLAPYIKGGKTGLFGGAGVGKTVLIQELINNIAKQHGGFSV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
FAGVGERTREGNDLWREMKESGVIDKTVLCYGQMNEPPGARLRVALSALTMAEHFRDSIG
EECCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHC
TDVLLFVDNIFRFSQAGSEVSALLGRMPSAVGYQPTLSTEMGALQERITSTKKGSITSVQ
CCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
AIYVPADDLTDPAPANAFAHLDATTVLSRAISDKGIYPAVDPLDSTSRVMNAQVLGEEHY
EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHH
LVAREVQRILQRYKDLQDIIAILGMDELSEDDKVLVARARKIEKFLSQPFHVAEVFTGAP
HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCC
GKYVKLADTVRSFKEVISGNYDHLPEQAFYMVGSIDDAIEKAKGYKG
CCEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA