Click here to switch to the map view.

The map label for this gene is atpH

Identifier: 45657123

GI number: 45657123

Start: 1531217

End: 1531777

Strand: Direct

Name: atpH

Synonym: LIC11240

Alternate gene names: 45657123

Gene position: 1531217-1531777 (Clockwise)

Preceding gene: 45657122

Following gene: 161621777

Centisome position: 35.8

GC content: 38.32

Gene sequence:

>561_bases
ATGAACGATTCCGGCGTTTCCAAAACATACGCTTCCGCACTTTTAGGAGCAACAAACGTTCCCGAAGAAGTGGAACAAGA
GTTAGGTGATTTAGCTCAGCTACTTTTCAAAGATGAAAAGGTAAAAAACTTTTTTCTTTCTCCTACTGTATCTAACGAAG
AGAAAGAGAAGGTTTTGATAAAAAATCTTCGAGGAAAAATTTCGGATATAACCCTAAACTTTTTAGGGGTACTTTTGAAT
CGAGGAAGAATCATTCATCTTCCCGAAATTCAAAAACAATTTACCGTAGAGCTGGATAAGAAAAAAGGAAGGGTGCGCGC
TCAAGTAAGAAGTTATCCTTCTTTAGAACCTGCTCAAGCGGCTAAACTCGGATCCATCCTTTCCGAAAAATTCAAATCGG
AATTCATTTTGGAAGTTTCAGAAGATAAATCTCTTCTGGGCGGATTCGTTGTACAATTCAATGACTTAAAAATCGAAAAG
TCAATCGCTTCCCAGCTGGGGGAAATCAAGAAGTCCATGCTGGAAAAGAAATTACCGGTTGGAGCCATCTATGAAAATTA
A

Upstream 100 bases:

>100_bases
GTTGCTGCCAAGGTTCTGGAAAAACAACTTAAAAGCGAAGACTACAAAGCTTTTATTGAAACAGAATTAGATAAACTGGG
AAAACTGAGCGCATAAACCA

Downstream 100 bases:

>100_bases
AACAGACGAAATTACGTCCGTTCTCAAGCAGGAAATTTTAAATTATAAAAAAGATCTGGGCGTGGAAGAAGTCGGAACGG
TCCTCGAGATCGGAGACGGA

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MNDSGVSKTYASALLGATNVPEEVEQELGDLAQLLFKDEKVKNFFLSPTVSNEEKEKVLIKNLRGKISDITLNFLGVLLN
RGRIIHLPEIQKQFTVELDKKKGRVRAQVRSYPSLEPAQAAKLGSILSEKFKSEFILEVSEDKSLLGGFVVQFNDLKIEK
SIASQLGEIKKSMLEKKLPVGAIYEN

Sequences:

>Translated_186_residues
MNDSGVSKTYASALLGATNVPEEVEQELGDLAQLLFKDEKVKNFFLSPTVSNEEKEKVLIKNLRGKISDITLNFLGVLLN
RGRIIHLPEIQKQFTVELDKKKGRVRAQVRSYPSLEPAQAAKLGSILSEKFKSEFILEVSEDKSLLGGFVVQFNDLKIEK
SIASQLGEIKKSMLEKKLPVGAIYEN
>Mature_186_residues
MNDSGVSKTYASALLGATNVPEEVEQELGDLAQLLFKDEKVKNFFLSPTVSNEEKEKVLIKNLRGKISDITLNFLGVLLN
RGRIIHLPEIQKQFTVELDKKKGRVRAQVRSYPSLEPAQAAKLGSILSEKFKSEFILEVSEDKSLLGGFVVQFNDLKIEK
SIASQLGEIKKSMLEKKLPVGAIYEN

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_LEPIC (Q72SY2)

Other databases:

- EMBL:   AE016823
- RefSeq:   YP_001209.1
- ProteinModelPortal:   Q72SY2
- SMR:   Q72SY2
- GeneID:   2770231
- GenomeReviews:   AE016823_GR
- KEGG:   lic:LIC11240
- HOGENOM:   HBG530524
- OMA:   STVYDGS
- ProtClustDB:   PRK13434
- BioCyc:   LINT267671:LIC_11240-MONOMER
- HAMAP:   MF_01416
- InterPro:   IPR000711
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 20751; Mature: 20751

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDSGVSKTYASALLGATNVPEEVEQELGDLAQLLFKDEKVKNFFLSPTVSNEEKEKVLI
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
KNLRGKISDITLNFLGVLLNRGRIIHLPEIQKQFTVELDKKKGRVRAQVRSYPSLEPAQA
HHHCCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHH
AKLGSILSEKFKSEFILEVSEDKSLLGGFVVQFNDLKIEKSIASQLGEIKKSMLEKKLPV
HHHHHHHHHHHHHHHEEEECCCHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
GAIYEN
CCCCCC
>Mature Secondary Structure
MNDSGVSKTYASALLGATNVPEEVEQELGDLAQLLFKDEKVKNFFLSPTVSNEEKEKVLI
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
KNLRGKISDITLNFLGVLLNRGRIIHLPEIQKQFTVELDKKKGRVRAQVRSYPSLEPAQA
HHHCCHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHH
AKLGSILSEKFKSEFILEVSEDKSLLGGFVVQFNDLKIEKSIASQLGEIKKSMLEKKLPV
HHHHHHHHHHHHHHHEEEECCCHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
GAIYEN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA