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The map label for this gene is yddU [C]

Identifier: 45657087

GI number: 45657087

Start: 1482846

End: 1484060

Strand: Direct

Name: yddU [C]

Synonym: LIC11203

Alternate gene names: 45657087

Gene position: 1482846-1484060 (Clockwise)

Preceding gene: 45657086

Following gene: 45657089

Centisome position: 34.67

GC content: 39.75

Gene sequence:

>1215_bases
ATGAATCAGACCACATTACCCAATCTACTGATTCTGGACGACGAGGAAGAAATTGCAGGTATTCTCGGCGATCTGGCTAG
ACAATGTGGTTTTGAAGTTACGATTACCCACGAGGCTGGGGTGTTTTTCGAAAGATTAAACGAGAAAACTCAGTACATCA
TTTTGGATCTTATGATTCCGGACGTAGACGGAGTAGACGTCTTACGGATGTTATCTGGGAAAAAATTTTCCATTTCTGTA
ATTCTAATCAGTGGAGCCGATAGAAGGGTTTTACAGAGTGCAGAAGCACTTGCGATCCAATACGGATTAAAAATTTCAGG
AGTTCTTGAAAAGCCGATTCGAATTCGAGAATATCAAAAATTGCTTACAGGATTAATTTCTGAGCAAAAAAACGAATCTG
CTCATTCTTTTACATCCGGGAAAAGAATAGTTCATGAACAGGCTTCCGTAATCGGTCCGGAAGAAATCGAACAGGGAATT
AGAGAAAATCAATTTGTACTTTTTTATCAGCCTAAGATCGATTTTAAAACCGGAACCGTTTCTGGTTTTGAGTCATTGGT
TCGTTGGTCTCATCCGGAAAGGGGTTTGATTTTTCCTGACGCTTTTATTCCAACTTTAGAATTGTATCCTAGTTTGATGG
ATGCGATGACCGAAAAGTTGATTCTTCAAGCCCTATCACAGTGTTCGATTTGGAATAAACAATTTCCGGGGATTGCTGTT
GCGGTTAACGTTTCTCCGGTGAGCATGAATAAGTTAATTCTTCCGGAAACCATCGCCAAGATGATTGAAAACTTTGGTTT
AAAAAACAATCAGTTAATCGTCGAAGTCACCGAAACTCAGTTATTGGAAAATATGACTTCTACTCTGGATATTCTTACCA
GAATTCGAATTCGGGGGATTGGGCTTTCTGTTGACGATTTTGGAATCGGTTATTCTTCGTTAAAACAAATTCATCGTTAT
CCGTTTACGGAACTTAAGATAGATCGTTCTTTTGTGAGTGTGGCTCCTTATGATAAAGAAGCCCTTTTTATCTGTCAAGC
CGCGATTGATCTGGGGCATAAACTAGGAATGACGGTTGTAGCGGAAGGAATCGAGACGGCTGAAGTAGGGGAATTGATGA
AACAACAAGGTTGTGATAAAGGACAGGGTTACTTTTATAGTAAGCCTATGCCGGCTAACTCCACATTACAGTTCTTAGCT
GGTTTTAAATCTTGA

Upstream 100 bases:

>100_bases
TTTCTTCTTCGGTTGACTTGGAAAATTCTACCTCAATTCCTTGGCCGATTTCTCGAAAATCTCTTGAGAATCATTTCGGT
ATATTATAATTTAGCCATTC

Downstream 100 bases:

>100_bases
AAGATTTGTTATAGTCTATCAAAAATATTTTGTTTTCATCTTTAAGTAATAAAGTTTTAGAATAGTATAATATATTTATA
TTGTAAAAATTAATTTTTCC

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MNQTTLPNLLILDDEEEIAGILGDLARQCGFEVTITHEAGVFFERLNEKTQYIILDLMIPDVDGVDVLRMLSGKKFSISV
ILISGADRRVLQSAEALAIQYGLKISGVLEKPIRIREYQKLLTGLISEQKNESAHSFTSGKRIVHEQASVIGPEEIEQGI
RENQFVLFYQPKIDFKTGTVSGFESLVRWSHPERGLIFPDAFIPTLELYPSLMDAMTEKLILQALSQCSIWNKQFPGIAV
AVNVSPVSMNKLILPETIAKMIENFGLKNNQLIVEVTETQLLENMTSTLDILTRIRIRGIGLSVDDFGIGYSSLKQIHRY
PFTELKIDRSFVSVAPYDKEALFICQAAIDLGHKLGMTVVAEGIETAEVGELMKQQGCDKGQGYFYSKPMPANSTLQFLA
GFKS

Sequences:

>Translated_404_residues
MNQTTLPNLLILDDEEEIAGILGDLARQCGFEVTITHEAGVFFERLNEKTQYIILDLMIPDVDGVDVLRMLSGKKFSISV
ILISGADRRVLQSAEALAIQYGLKISGVLEKPIRIREYQKLLTGLISEQKNESAHSFTSGKRIVHEQASVIGPEEIEQGI
RENQFVLFYQPKIDFKTGTVSGFESLVRWSHPERGLIFPDAFIPTLELYPSLMDAMTEKLILQALSQCSIWNKQFPGIAV
AVNVSPVSMNKLILPETIAKMIENFGLKNNQLIVEVTETQLLENMTSTLDILTRIRIRGIGLSVDDFGIGYSSLKQIHRY
PFTELKIDRSFVSVAPYDKEALFICQAAIDLGHKLGMTVVAEGIETAEVGELMKQQGCDKGQGYFYSKPMPANSTLQFLA
GFKS
>Mature_404_residues
MNQTTLPNLLILDDEEEIAGILGDLARQCGFEVTITHEAGVFFERLNEKTQYIILDLMIPDVDGVDVLRMLSGKKFSISV
ILISGADRRVLQSAEALAIQYGLKISGVLEKPIRIREYQKLLTGLISEQKNESAHSFTSGKRIVHEQASVIGPEEIEQGI
RENQFVLFYQPKIDFKTGTVSGFESLVRWSHPERGLIFPDAFIPTLELYPSLMDAMTEKLILQALSQCSIWNKQFPGIAV
AVNVSPVSMNKLILPETIAKMIENFGLKNNQLIVEVTETQLLENMTSTLDILTRIRIRGIGLSVDDFGIGYSSLKQIHRY
PFTELKIDRSFVSVAPYDKEALFICQAAIDLGHKLGMTVVAEGIETAEVGELMKQQGCDKGQGYFYSKPMPANSTLQFLA
GFKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=238, Percent_Identity=37.3949579831933, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1787541, Length=237, Percent_Identity=31.6455696202532, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1786507, Length=262, Percent_Identity=30.1526717557252, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=29.9595141700405, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=33.3333333333333, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=31.3008130081301, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=29.6747967479675, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI87081980, Length=257, Percent_Identity=31.5175097276265, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787055, Length=264, Percent_Identity=29.9242424242424, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI226510982, Length=271, Percent_Identity=25.4612546125461, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1788849, Length=246, Percent_Identity=29.2682926829268, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI87082096, Length=274, Percent_Identity=24.0875912408759, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 45043; Mature: 45043

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQTTLPNLLILDDEEEIAGILGDLARQCGFEVTITHEAGVFFERLNEKTQYIILDLMIP
CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCEEEEEEEEEC
DVDGVDVLRMLSGKKFSISVILISGADRRVLQSAEALAIQYGLKISGVLEKPIRIREYQK
CCCCHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCEEECHHCCCHHHHHHHH
LLTGLISEQKNESAHSFTSGKRIVHEQASVIGPEEIEQGIRENQFVLFYQPKIDFKTGTV
HHHHHHHHCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCH
SGFESLVRWSHPERGLIFPDAFIPTLELYPSLMDAMTEKLILQALSQCSIWNKQFPGIAV
HHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
AVNVSPVSMNKLILPETIAKMIENFGLKNNQLIVEVTETQLLENMTSTLDILTRIRIRGI
EEEECCCCCCCEECHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHEEE
GLSVDDFGIGYSSLKQIHRYPFTELKIDRSFVSVAPYDKEALFICQAAIDLGHKLGMTVV
CCCCCCCCCCHHHHHHHHHCCCHHEEECCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHH
AEGIETAEVGELMKQQGCDKGQGYFYSKPMPANSTLQFLAGFKS
HCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MNQTTLPNLLILDDEEEIAGILGDLARQCGFEVTITHEAGVFFERLNEKTQYIILDLMIP
CCCCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCCCEEEEEEEEEC
DVDGVDVLRMLSGKKFSISVILISGADRRVLQSAEALAIQYGLKISGVLEKPIRIREYQK
CCCCHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCEEECHHCCCHHHHHHHH
LLTGLISEQKNESAHSFTSGKRIVHEQASVIGPEEIEQGIRENQFVLFYQPKIDFKTGTV
HHHHHHHHCCCCCHHHHHCCCHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCCCCCCCH
SGFESLVRWSHPERGLIFPDAFIPTLELYPSLMDAMTEKLILQALSQCSIWNKQFPGIAV
HHHHHHHHCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
AVNVSPVSMNKLILPETIAKMIENFGLKNNQLIVEVTETQLLENMTSTLDILTRIRIRGI
EEEECCCCCCCEECHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHEEE
GLSVDDFGIGYSSLKQIHRYPFTELKIDRSFVSVAPYDKEALFICQAAIDLGHKLGMTVV
CCCCCCCCCCHHHHHHHHHCCCHHEEECCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHH
AEGIETAEVGELMKQQGCDKGQGYFYSKPMPANSTLQFLAGFKS
HCCCCHHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]