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The map label for this gene is 45656448

Identifier: 45656448

GI number: 45656448

Start: 673076

End: 673543

Strand: Reverse

Name: 45656448

Synonym: LIC10550

Alternate gene names: NA

Gene position: 673543-673076 (Counterclockwise)

Preceding gene: 45656450

Following gene: 45656447

Centisome position: 15.75

GC content: 35.26

Gene sequence:

>468_bases
TTGGCAAAAATGGAGATTCTATCCTTAGAGGAGGCTAAATTCTCAAAAAATGCATCAAAAATCCGATTCCGAACCTATTT
TTTGGTTGAAAAACCGTATTCAAACAGCCAAAGAAGTAACGGAACAACTATGGAAATAACTGTACAAGACGATATTCATA
TTATAAAAATTGCAGGATCCATTCTTCAATCCGATAGTGAGGAATTAGACCGTAACCTGAGCGAGCATAATTTTGACCCA
AGTCCTAAGATCATTATCGATCTGACAGAAGTGAATCACATCTGCTCCACCGCGTTAGGCATCATTGTTTCTTATAAAAA
GAAATTTAAAAGTGCCGAAGGTGATATTATTATCGTAATCAACGATGAAGATCTGTTGCAACTTTTCGAAATCACGATGT
TAGACAAGGTTTTTAAAATAGTTCCGAATATCGAAGATGCATTCGATGAATTTAAACTAAACCCTTGA

Upstream 100 bases:

>100_bases
ATCTTCTGTGAAAAGGTAATAGTTCCTACAATTCGGTTAAAGAAAAAGATAGATTTTTACAGTTTTAAAATTTGATAAAA
CCCAAAAAGAAAAAGAAACT

Downstream 100 bases:

>100_bases
AGCGACAACTCGCTCTCGGCACAAACAACTTAAACAAAGTAAAAGAAGTAAGCTCCATTCTCATGGAGTTAGGAATTCAG
ATCCTTACGCCTAAGGATCT

Product: anti-sigma factor antagonist

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MAKMEILSLEEAKFSKNASKIRFRTYFLVEKPYSNSQRSNGTTMEITVQDDIHIIKIAGSILQSDSEELDRNLSEHNFDP
SPKIIIDLTEVNHICSTALGIIVSYKKKFKSAEGDIIIVINDEDLLQLFEITMLDKVFKIVPNIEDAFDEFKLNP

Sequences:

>Translated_155_residues
MAKMEILSLEEAKFSKNASKIRFRTYFLVEKPYSNSQRSNGTTMEITVQDDIHIIKIAGSILQSDSEELDRNLSEHNFDP
SPKIIIDLTEVNHICSTALGIIVSYKKKFKSAEGDIIIVINDEDLLQLFEITMLDKVFKIVPNIEDAFDEFKLNP
>Mature_154_residues
AKMEILSLEEAKFSKNASKIRFRTYFLVEKPYSNSQRSNGTTMEITVQDDIHIIKIAGSILQSDSEELDRNLSEHNFDPS
PKIIIDLTEVNHICSTALGIIVSYKKKFKSAEGDIIIVINDEDLLQLFEITMLDKVFKIVPNIEDAFDEFKLNP

Specific function: Unknown

COG id: COG1366

COG function: function code T; Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17699; Mature: 17567

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKMEILSLEEAKFSKNASKIRFRTYFLVEKPYSNSQRSNGTTMEITVQDDIHIIKIAGS
CCCCEEEECHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEHHH
ILQSDSEELDRNLSEHNFDPSPKIIIDLTEVNHICSTALGIIVSYKKKFKSAEGDIIIVI
HHCCCHHHHHCCHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
NDEDLLQLFEITMLDKVFKIVPNIEDAFDEFKLNP
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure 
AKMEILSLEEAKFSKNASKIRFRTYFLVEKPYSNSQRSNGTTMEITVQDDIHIIKIAGS
CCCEEEECHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCEEEEEECCCEEEEEEHHH
ILQSDSEELDRNLSEHNFDPSPKIIIDLTEVNHICSTALGIIVSYKKKFKSAEGDIIIVI
HHCCCHHHHHCCHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
NDEDLLQLFEITMLDKVFKIVPNIEDAFDEFKLNP
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA