Click here to switch to the map view.

The map label for this gene is rpl18p [H]

Identifier: 45358981

GI number: 45358981

Start: 1390803

End: 1391384

Strand: Direct

Name: rpl18p [H]

Synonym: MMP1418

Alternate gene names: 45358981

Gene position: 1390803-1391384 (Clockwise)

Preceding gene: 45358980

Following gene: 45358982

Centisome position: 83.73

GC content: 37.11

Gene sequence:

>582_bases
ATGGCAATGAACGCCAAATTCAGAGTTCCTTTTAGAAGAAGAAGAGAAGGAAAAACAGATTTCAGACAAAGATTAGGATT
ATTATTGTCTGGTAAACCAAGATTAGTTGCGAGAAAATCCTTAAACAATGTGACCGCTCAGCTTATGGCATACGATGAAA
AAGGAGACGTTGTTTTAGTTTCAGCACACTCCAAAGAACTCGTTAAAATGGGCTACAAAGGACACTGCGGAAACTTACCT
GCTGCATACTTAACAGGTTTATTGTTAGGTGCAAAAGCAGTTAAAGAAGATGTAAAAGAAGCAGTTTTGGACAAAGGTCT
TCACAGAGCTACCAAAGGAGCTGCAATTTTCGCTGTTTTAAAAGGTGCACTTGATGCAGGTATGGATATACCTCACGGTG
ATAAAATCATCGCAGATGAAGAAAGATTAAACGGAACTCACGTTAAAAATTACGCAGAAAGCTTAAAAGAAGATGCAGAT
GCGTACAAAAAACAGTTCTCAAAATACTTAGAAAAAGGATTAAACCCAGAAGACTTGCCAGAACACGTTGAAGAACTGAA
AGAAAAAATCCTTAACTTATAA

Upstream 100 bases:

>100_bases
TGGCTAAAGGTGGAGCATTCAGAAGTAGAAATCACATGAAATTATACATGAAAGAACATGGAATTTTAGCTGAATAATTC
AAATTTAAGGAGGAATGACT

Downstream 100 bases:

>100_bases
GGTGATATAAATGGCTGAAAAAAGAGCTGAAAAAAGAAAATTCAATACCGAAGCTTGGGAGCCAAAAACCCAAATTGGTA
GAATGGTTAAGGAAGGAACA

Product: 50S ribosomal protein L18P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MAMNAKFRVPFRRRREGKTDFRQRLGLLLSGKPRLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLP
AAYLTGLLLGAKAVKEDVKEAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIADEERLNGTHVKNYAESLKEDAD
AYKKQFSKYLEKGLNPEDLPEHVEELKEKILNL

Sequences:

>Translated_193_residues
MAMNAKFRVPFRRRREGKTDFRQRLGLLLSGKPRLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLP
AAYLTGLLLGAKAVKEDVKEAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIADEERLNGTHVKNYAESLKEDAD
AYKKQFSKYLEKGLNPEDLPEHVEELKEKILNL
>Mature_192_residues
AMNAKFRVPFRRRREGKTDFRQRLGLLLSGKPRLVARKSLNNVTAQLMAYDEKGDVVLVSAHSKELVKMGYKGHCGNLPA
AYLTGLLLGAKAVKEDVKEAVLDKGLHRATKGAAIFAVLKGALDAGMDIPHGDKIIADEERLNGTHVKNYAESLKEDADA
YKKQFSKYLEKGLNPEDLPEHVEELKEKILNL

Specific function: This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance [H]

COG id: COG0256

COG function: function code J; Ribosomal protein L18

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L18P family [H]

Homologues:

Organism=Homo sapiens, GI14591909, Length=224, Percent_Identity=31.25, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17534333, Length=221, Percent_Identity=38.0090497737557, Blast_Score=120, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6325126, Length=237, Percent_Identity=32.0675105485232, Blast_Score=102, Evalue=3e-23,
Organism=Drosophila melanogaster, GI116007384, Length=235, Percent_Identity=33.1914893617021, Blast_Score=109, Evalue=1e-24,
Organism=Drosophila melanogaster, GI116007382, Length=235, Percent_Identity=33.1914893617021, Blast_Score=109, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005484
- InterPro:   IPR005485 [H]

Pfam domain/function: PF00861 Ribosomal_L18p [H]

EC number: NA

Molecular weight: Translated: 21409; Mature: 21278

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMNAKFRVPFRRRREGKTDFRQRLGLLLSGKPRLVARKSLNNVTAQLMAYDEKGDVVLV
CCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
SAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVKEDVKEAVLDKGLHRATKGAAIFAVL
ECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGALDAGMDIPHGDKIIADEERLNGTHVKNYAESLKEDADAYKKQFSKYLEKGLNPEDLP
HHHHHCCCCCCCCCCEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
EHVEELKEKILNL
HHHHHHHHHHCCC
>Mature Secondary Structure 
AMNAKFRVPFRRRREGKTDFRQRLGLLLSGKPRLVARKSLNNVTAQLMAYDEKGDVVLV
CCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
SAHSKELVKMGYKGHCGNLPAAYLTGLLLGAKAVKEDVKEAVLDKGLHRATKGAAIFAVL
ECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGALDAGMDIPHGDKIIADEERLNGTHVKNYAESLKEDADAYKKQFSKYLEKGLNPEDLP
HHHHHCCCCCCCCCCEECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
EHVEELKEKILNL
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA