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The map label for this gene is rpl19e [H]

Identifier: 45358980

GI number: 45358980

Start: 1390330

End: 1390779

Strand: Direct

Name: rpl19e [H]

Synonym: MMP1417

Alternate gene names: 45358980

Gene position: 1390330-1390779 (Clockwise)

Preceding gene: 45358979

Following gene: 45358981

Centisome position: 83.7

GC content: 37.33

Gene sequence:

>450_bases
ATGGATGTATCAACCCAGAGAAGAATTGCTGCAGCTGTTTTGGATTGCGGTATCGACAGGGTATGGATTGATCCGGAAAA
CCTGGAAAAAGTCAAAATGGCAATCACCAAAGATGACATTAGACTCTTGATTAACGATGGAATCATTGTTAAAAAACAGG
AAAAAGGAATCAGCAGCGCTAGGAAAAAAGAAGTTCAAGAACAGAAGAGAAAAGGAAAGAGAAAAGGACCTGGTTCAAGA
AAAGGGGCTAAAGGTGCTAGAACGCCTAAAAAAGAGAAATGGATGAACACAATTAGGCCGCTCAGAAAAATGCTGAAAGA
ATTAAGAGAAAATGAAAAAATCGAAAGATCAGCATACAGAAAACTCTACAGAATGGCTAAAGGTGGAGCATTCAGAAGTA
GAAATCACATGAAATTATACATGAAAGAACATGGAATTTTAGCTGAATAA

Upstream 100 bases:

>100_bases
AAAAAGCTAATGAATTAGGAATTAGAGTGTTTAACGTATCCAAACAAAAACAGGAAGAATTCTTAAGTTTATAATCTCGC
TTAAGATATAAGGTGATATT

Downstream 100 bases:

>100_bases
TTCAAATTTAAGGAGGAATGACTATGGCAATGAACGCCAAATTCAGAGTTCCTTTTAGAAGAAGAAGAGAAGGAAAAACA
GATTTCAGACAAAGATTAGG

Product: 50S ribosomal protein L19e

Products: NA

Alternate protein names: ORF E [H]

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MDVSTQRRIAAAVLDCGIDRVWIDPENLEKVKMAITKDDIRLLINDGIIVKKQEKGISSARKKEVQEQKRKGKRKGPGSR
KGAKGARTPKKEKWMNTIRPLRKMLKELRENEKIERSAYRKLYRMAKGGAFRSRNHMKLYMKEHGILAE

Sequences:

>Translated_149_residues
MDVSTQRRIAAAVLDCGIDRVWIDPENLEKVKMAITKDDIRLLINDGIIVKKQEKGISSARKKEVQEQKRKGKRKGPGSR
KGAKGARTPKKEKWMNTIRPLRKMLKELRENEKIERSAYRKLYRMAKGGAFRSRNHMKLYMKEHGILAE
>Mature_149_residues
MDVSTQRRIAAAVLDCGIDRVWIDPENLEKVKMAITKDDIRLLINDGIIVKKQEKGISSARKKEVQEQKRKGKRKGPGSR
KGAKGARTPKKEKWMNTIRPLRKMLKELRENEKIERSAYRKLYRMAKGGAFRSRNHMKLYMKEHGILAE

Specific function: Unknown

COG id: COG2147

COG function: function code J; Ribosomal protein L19E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L19e family [H]

Homologues:

Organism=Homo sapiens, GI4506609, Length=129, Percent_Identity=40.3100775193798, Blast_Score=87, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI17508673, Length=122, Percent_Identity=38.5245901639344, Blast_Score=100, Evalue=2e-22,
Organism=Saccharomyces cerevisiae, GI6319559, Length=133, Percent_Identity=36.0902255639098, Blast_Score=84, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6319444, Length=133, Percent_Identity=36.0902255639098, Blast_Score=84, Evalue=1e-17,
Organism=Drosophila melanogaster, GI45552831, Length=136, Percent_Identity=39.7058823529412, Blast_Score=102, Evalue=8e-23,
Organism=Drosophila melanogaster, GI17136322, Length=136, Percent_Identity=39.7058823529412, Blast_Score=102, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000196
- InterPro:   IPR015972
- InterPro:   IPR015973
- InterPro:   IPR015974 [H]

Pfam domain/function: PF01280 Ribosomal_L19e [H]

EC number: NA

Molecular weight: Translated: 17302; Mature: 17302

Theoretical pI: Translated: 11.15; Mature: 11.15

Prosite motif: PS00526 RIBOSOMAL_L19E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVSTQRRIAAAVLDCGIDRVWIDPENLEKVKMAITKDDIRLLINDGIIVKKQEKGISSA
CCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHEEEECCCEEEEEHHHCHHHH
RKKEVQEQKRKGKRKGPGSRKGAKGARTPKKEKWMNTIRPLRKMLKELRENEKIERSAYR
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
KLYRMAKGGAFRSRNHMKLYMKEHGILAE
HHHHHHCCCCCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure
MDVSTQRRIAAAVLDCGIDRVWIDPENLEKVKMAITKDDIRLLINDGIIVKKQEKGISSA
CCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHEEEECCCEEEEEHHHCHHHH
RKKEVQEQKRKGKRKGPGSRKGAKGARTPKKEKWMNTIRPLRKMLKELRENEKIERSAYR
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
KLYRMAKGGAFRSRNHMKLYMKEHGILAE
HHHHHHCCCCCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2530355 [H]