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The map label for this gene is rpl30e [H]

Identifier: 45358928

GI number: 45358928

Start: 1346873

End: 1347175

Strand: Direct

Name: rpl30e [H]

Synonym: MMP1365

Alternate gene names: 45358928

Gene position: 1346873-1347175 (Clockwise)

Preceding gene: 45358927

Following gene: 45358929

Centisome position: 81.08

GC content: 38.61

Gene sequence:

>303_bases
ATGGACATAAACAGAGCTATAAGAGTAGCAGTGGACACTGGAAATGTAGTCTTAGGTACAAAACAGGCTATTAAAAACAT
AAAACACGGCGAAGGCCAGTTAGTAATTGTTGCAGACAACTGCGCAAAAGACGTTAGAGAAGACATTTTTTATTACACAC
AACTTTCAGAAACCCCGGTTTACACACACCAGGCAACTTCAATTGAACTTGGAGCTATTTGTGGAAAACCATTCCCTGTT
TCCGCATTGTTGGTTTTAGAACCTGGTAACTCGGCTATTTTAAACGTTAACAATGAAGAATAA

Upstream 100 bases:

>100_bases
TAACATGTAACTATTAACTAGTTCGTATATTCATAGGGACATTAATTTCCAAATTGCATAGGAAAACCCTCTGGAGAATA
TAATGAGAAGGAGGTCTAAT

Downstream 100 bases:

>100_bases
CCGCGGGTGATGGTTGATGAGAATTAAACTTAATACAGAAGATATCATGAGAATCAGTCTCTTCGAAAAGATGACTGGTG
CTGACGTGATTGATAGCACT

Product: 50S ribosomal protein L30e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 100

Protein sequence:

>100_residues
MDINRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVREDIFYYTQLSETPVYTHQATSIELGAICGKPFPV
SALLVLEPGNSAILNVNNEE

Sequences:

>Translated_100_residues
MDINRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVREDIFYYTQLSETPVYTHQATSIELGAICGKPFPV
SALLVLEPGNSAILNVNNEE
>Mature_100_residues
MDINRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVREDIFYYTQLSETPVYTHQATSIELGAICGKPFPV
SALLVLEPGNSAILNVNNEE

Specific function: Unknown

COG id: COG1911

COG function: function code J; Ribosomal protein L30E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L30e family [H]

Homologues:

Organism=Homo sapiens, GI4506631, Length=99, Percent_Identity=37.3737373737374, Blast_Score=80, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17508679, Length=93, Percent_Identity=37.6344086021505, Blast_Score=70, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321408, Length=94, Percent_Identity=35.1063829787234, Blast_Score=67, Evalue=4e-13,
Organism=Drosophila melanogaster, GI17864264, Length=92, Percent_Identity=35.8695652173913, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24585096, Length=92, Percent_Identity=35.8695652173913, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000231
- InterPro:   IPR022991
- InterPro:   IPR004038 [H]

Pfam domain/function: PF01248 Ribosomal_L7Ae [H]

EC number: NA

Molecular weight: Translated: 10824; Mature: 10824

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS00993 RIBOSOMAL_L30E_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVREDIFYYTQLSETPV
CCCCCEEEEEEECCCEEEECHHHHCCCCCCCCEEEEEECCCHHHHHHHHEEEEECCCCCC
YTHQATSIELGAICGKPFPVSALLVLEPGNSAILNVNNEE
EEECCCEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCC
>Mature Secondary Structure
MDINRAIRVAVDTGNVVLGTKQAIKNIKHGEGQLVIVADNCAKDVREDIFYYTQLSETPV
CCCCCEEEEEEECCCEEEECHHHHCCCCCCCCEEEEEECCCHHHHHHHHEEEEECCCCCC
YTHQATSIELGAICGKPFPVSALLVLEPGNSAILNVNNEE
EEECCCEEEEEEECCCCCCCEEEEEECCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA