Click here to switch to the map view.

The map label for this gene is 45358905

Identifier: 45358905

GI number: 45358905

Start: 1324077

End: 1324472

Strand: Direct

Name: 45358905

Synonym: MMP1342

Alternate gene names: NA

Gene position: 1324077-1324472 (Clockwise)

Preceding gene: 45358904

Following gene: 45358917

Centisome position: 79.71

GC content: 27.27

Gene sequence:

>396_bases
ATGTACAGAGTAATTCCAGACACCAATTTTTTAATTTATGCATTTAAACAGGGCATAAATTTCGAATACGAATTAAATAG
TGCTATTGATAGTGGTTACAAGATATGTATTATGGATTGCGTTTTAAAAGAACTTGAAAAATTAAAATTGGAATTTAAGG
GAAAAGAAAAGCTTTCTGCGAATATTGCCCTAAAATATGCCAAAAATTTTGAAATCATCGAATATTCAAACGGAAAATAT
GCAGATGAAATGATTATAAATTATTCTAAGGAAAATAAAGATGTAATAATCTGTACTAACGATAAAAAACTAAAAAAAGA
CTTGATCGATATTGGAACCCCGATAATTCTTGTAAAACAACACAACCACTTTGAACTTCAGGGTTATTTAAAATAA

Upstream 100 bases:

>100_bases
TAATTACGCACCATCAAGAACTCGAACAGATTGCAGATAACATTGTAAAAGTTAGAAAAATCGGCGAAAATTCAAAAGTA
TCTTTAGAATAGGTTAAAAA

Downstream 100 bases:

>100_bases
ATATTAAAAAATCGGTTTAATATTTAATATAATCAAATTTACAATTTTTATTTTCCATTGTTATTTTTAAACCAATTTTT
GCAGGAATTACTGGAATATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MYRVIPDTNFLIYAFKQGINFEYELNSAIDSGYKICIMDCVLKELEKLKLEFKGKEKLSANIALKYAKNFEIIEYSNGKY
ADEMIINYSKENKDVIICTNDKKLKKDLIDIGTPIILVKQHNHFELQGYLK

Sequences:

>Translated_131_residues
MYRVIPDTNFLIYAFKQGINFEYELNSAIDSGYKICIMDCVLKELEKLKLEFKGKEKLSANIALKYAKNFEIIEYSNGKY
ADEMIINYSKENKDVIICTNDKKLKKDLIDIGTPIILVKQHNHFELQGYLK
>Mature_131_residues
MYRVIPDTNFLIYAFKQGINFEYELNSAIDSGYKICIMDCVLKELEKLKLEFKGKEKLSANIALKYAKNFEIIEYSNGKY
ADEMIINYSKENKDVIICTNDKKLKKDLIDIGTPIILVKQHNHFELQGYLK

Specific function: Unknown

COG id: COG1412

COG function: function code R; Uncharacterized proteins of PilT N-term./Vapc superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PIN domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006984
- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 15298; Mature: 15298

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRVIPDTNFLIYAFKQGINFEYELNSAIDSGYKICIMDCVLKELEKLKLEFKGKEKLSA
CEEECCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHEEEECCCCCEEE
NIALKYAKNFEIIEYSNGKYADEMIINYSKENKDVIICTNDKKLKKDLIDIGTPIILVKQ
EEEEEEECCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHCCCCEEEEEE
HNHFELQGYLK
CCCEEEEEEEC
>Mature Secondary Structure
MYRVIPDTNFLIYAFKQGINFEYELNSAIDSGYKICIMDCVLKELEKLKLEFKGKEKLSA
CEEECCCCCEEEEEEECCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHEEEECCCCCEEE
NIALKYAKNFEIIEYSNGKYADEMIINYSKENKDVIICTNDKKLKKDLIDIGTPIILVKQ
EEEEEEECCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHCCCCEEEEEE
HNHFELQGYLK
CCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]