Definition Methanococcus maripaludis S2 chromosome, complete genome.
Accession NC_005791
Length 1,661,137

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The map label for this gene is 45358849

Identifier: 45358849

GI number: 45358849

Start: 1269354

End: 1270664

Strand: Direct

Name: 45358849

Synonym: MMP1286

Alternate gene names: NA

Gene position: 1269354-1270664 (Clockwise)

Preceding gene: 45358847

Following gene: 45358850

Centisome position: 76.41

GC content: 35.24

Gene sequence:

>1311_bases
ATGGATTTAGGAACTACAAAATATATCATTTATACCGAGCTCATTGCGGATGGTTACGTTGAAAAACACGACGTTATCGG
TGCAATTTTCGGACAGACTGAAGGACTGTTGAGTAACGAACTTGATTTGAGAGATTTGCAAAAAAGTGGGAGAATTGGAA
GAATTGATGTTGAACTCGAAAATATCAATGGAAAATCTTTTGCTAAAATAACACTGCCTTCAAGCCTCGACAAGGTTGAA
ACATCGATACTTGCAGCAACTCTTGAAACGATTGACAGAGTTGGTCCCTGTTTTGCCACGGTTAAGATAACCGAAGTTGA
AGACATCAGGGTATCAAAAAGACAGTACATCACAAACCGTGCAAGATCTATTTTAAGAAAATTAATGGACGAAATGATTG
ACACCTATGAAATAACGGAAGAAATCAAAGAATCTTTAAGAACCGAAGAAATTATGGAATATGGGCCAGAAAACCTTCCT
TGTGGTCCTAATATAATACATTCCGATTCTATTATTGTTGTTGAAGGAAGAGCCGACGTTTTAAACCTTTTAAGATGTGG
AATTAAAAATACAGTAGCTGTTGAAGGAACGTCTGTTCCAAAATCAATTATGGAACTAACAAAGAAAAAGACCACAACCG
CTTTTACCGATGGAGATAGGGGAGGAGAGTTAATTTTAAAAGAACTTCTTCAAACTTGCGATATCGACTACGTTGCAAGA
GCACCGTACGGAAAAGAAGTTGAAGGAACGTCTAAAAAAGAACTGATGAAATGTTTGAGGGCAAAAGTTCCTGTTGAACA
GATCGTTGGAAACAACTGCAATGGTTCTGGAGTTATTGAATCAAATACTCCAAAAGAAATTGTTGAACCAATAACTCCTA
AACACTTTGAAAAAGTAGAAACACCGGCAGTTATTGAACCGGTTTTTAAAGAAGACGCAATCGAAGAAGAAACAATTATA
GTAGAGCCCGTAAAAAAAGCCGAAACTGAAATTATAGATGTTGATGCTACAAACGAAACTCAATCTGAAAAAAAGTTCAG
CGGAGTTAAAGAAATAGTTGATAGCATTAAAAATACAGGCAACGTCAAGTTTGTTGTTGATGGAACCGAAAAAACGAATA
CATTCAAAGAATTTCTAACAAATATCCATGAAATCAAAAAAATGGACTTCTTTGCAGCAGATATGCCGATAAGTCAAAAA
ATTGTGGATTTACTTTATGATAAAACCCCGATAATTGTTGGAAAAGAAATAAATGTTACTAAAAAACCCGTAAACCTTCG
ATTATTTTCATTTGACGAAATTGTAGCTTAA

Upstream 100 bases:

>100_bases
TACAAAAAATATTATAAGTAGATAGATGAAATTAGAATAATGATTTCGAGAAAATTTGGTTTTGAGACTGGTCGGTTAAA
CTTCATAAGGAGGATCATTT

Downstream 100 bases:

>100_bases
ATAACAATTTCTTTTAAATTTAAAGGTGATTAAATGCATAAGGATGAACTCATCCAATTACACCAGCTTTTGGTTTATAT
GAGAAAAGATTTGGCAAGAA

Product: DNA primase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MDLGTTKYIIYTELIADGYVEKHDVIGAIFGQTEGLLSNELDLRDLQKSGRIGRIDVELENINGKSFAKITLPSSLDKVE
TSILAATLETIDRVGPCFATVKITEVEDIRVSKRQYITNRARSILRKLMDEMIDTYEITEEIKESLRTEEIMEYGPENLP
CGPNIIHSDSIIVVEGRADVLNLLRCGIKNTVAVEGTSVPKSIMELTKKKTTTAFTDGDRGGELILKELLQTCDIDYVAR
APYGKEVEGTSKKELMKCLRAKVPVEQIVGNNCNGSGVIESNTPKEIVEPITPKHFEKVETPAVIEPVFKEDAIEEETII
VEPVKKAETEIIDVDATNETQSEKKFSGVKEIVDSIKNTGNVKFVVDGTEKTNTFKEFLTNIHEIKKMDFFAADMPISQK
IVDLLYDKTPIIVGKEINVTKKPVNLRLFSFDEIVA

Sequences:

>Translated_436_residues
MDLGTTKYIIYTELIADGYVEKHDVIGAIFGQTEGLLSNELDLRDLQKSGRIGRIDVELENINGKSFAKITLPSSLDKVE
TSILAATLETIDRVGPCFATVKITEVEDIRVSKRQYITNRARSILRKLMDEMIDTYEITEEIKESLRTEEIMEYGPENLP
CGPNIIHSDSIIVVEGRADVLNLLRCGIKNTVAVEGTSVPKSIMELTKKKTTTAFTDGDRGGELILKELLQTCDIDYVAR
APYGKEVEGTSKKELMKCLRAKVPVEQIVGNNCNGSGVIESNTPKEIVEPITPKHFEKVETPAVIEPVFKEDAIEEETII
VEPVKKAETEIIDVDATNETQSEKKFSGVKEIVDSIKNTGNVKFVVDGTEKTNTFKEFLTNIHEIKKMDFFAADMPISQK
IVDLLYDKTPIIVGKEINVTKKPVNLRLFSFDEIVA
>Mature_436_residues
MDLGTTKYIIYTELIADGYVEKHDVIGAIFGQTEGLLSNELDLRDLQKSGRIGRIDVELENINGKSFAKITLPSSLDKVE
TSILAATLETIDRVGPCFATVKITEVEDIRVSKRQYITNRARSILRKLMDEMIDTYEITEEIKESLRTEEIMEYGPENLP
CGPNIIHSDSIIVVEGRADVLNLLRCGIKNTVAVEGTSVPKSIMELTKKKTTTAFTDGDRGGELILKELLQTCDIDYVAR
APYGKEVEGTSKKELMKCLRAKVPVEQIVGNNCNGSGVIESNTPKEIVEPITPKHFEKVETPAVIEPVFKEDAIEEETII
VEPVKKAETEIIDVDATNETQSEKKFSGVKEIVDSIKNTGNVKFVVDGTEKTNTFKEFLTNIHEIKKMDFFAADMPISQK
IVDLLYDKTPIIVGKEINVTKKPVNLRLFSFDEIVA

Specific function: Unknown

COG id: COG0358

COG function: function code L; DNA primase (bacterial type)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006171
- InterPro:   IPR020607 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 48637; Mature: 48637

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLGTTKYIIYTELIADGYVEKHDVIGAIFGQTEGLLSNELDLRDLQKSGRIGRIDVELE
CCCCCEEEEEEHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEEEEEE
NINGKSFAKITLPSSLDKVETSILAATLETIDRVGPCFATVKITEVEDIRVSKRQYITNR
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHH
ARSILRKLMDEMIDTYEITEEIKESLRTEEIMEYGPENLPCGPNIIHSDSIIVVEGRADV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEECCHHH
LNLLRCGIKNTVAVEGTSVPKSIMELTKKKTTTAFTDGDRGGELILKELLQTCDIDYVAR
HHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHCCCCEEEC
APYGKEVEGTSKKELMKCLRAKVPVEQIVGNNCNGSGVIESNTPKEIVEPITPKHFEKVE
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCEEECCCCCHHHHCCCCCHHHHHCC
TPAVIEPVFKEDAIEEETIIVEPVKKAETEIIDVDATNETQSEKKFSGVKEIVDSIKNTG
CCHHHHHHHHHCCCCCCEEEECCHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
NVKFVVDGTEKTNTFKEFLTNIHEIKKMDFFAADMPISQKIVDLLYDKTPIIVGKEINVT
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCC
KKPVNLRLFSFDEIVA
CCCCEEEEECHHHHCC
>Mature Secondary Structure
MDLGTTKYIIYTELIADGYVEKHDVIGAIFGQTEGLLSNELDLRDLQKSGRIGRIDVELE
CCCCCEEEEEEHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCEEEEEEEEE
NINGKSFAKITLPSSLDKVETSILAATLETIDRVGPCFATVKITEVEDIRVSKRQYITNR
CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHH
ARSILRKLMDEMIDTYEITEEIKESLRTEEIMEYGPENLPCGPNIIHSDSIIVVEGRADV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCEEEEECCHHH
LNLLRCGIKNTVAVEGTSVPKSIMELTKKKTTTAFTDGDRGGELILKELLQTCDIDYVAR
HHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHCCCCEEEC
APYGKEVEGTSKKELMKCLRAKVPVEQIVGNNCNGSGVIESNTPKEIVEPITPKHFEKVE
CCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCEEECCCCCHHHHCCCCCHHHHHCC
TPAVIEPVFKEDAIEEETIIVEPVKKAETEIIDVDATNETQSEKKFSGVKEIVDSIKNTG
CCHHHHHHHHHCCCCCCEEEECCHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC
NVKFVVDGTEKTNTFKEFLTNIHEIKKMDFFAADMPISQKIVDLLYDKTPIIVGKEINVT
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCC
KKPVNLRLFSFDEIVA
CCCCEEEEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA