Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
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Accession | NC_002944 |
Length | 4,829,781 |
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The map label for this gene is 41410185
Identifier: 41410185
GI number: 41410185
Start: 4557032
End: 4558531
Strand: Direct
Name: 41410185
Synonym: MAP4087
Alternate gene names: NA
Gene position: 4557032-4558531 (Clockwise)
Preceding gene: 41410184
Following gene: 41410186
Centisome position: 94.35
GC content: 68.13
Gene sequence:
>1500_bases ATGAGCACCATCTTCGACATCCGAAACCTGCGGCTGCCCAAGGTGTCCGCCCGGGTGCTGGTGATCGCGGCGCTGGCGGC GGTCTTCGTCTTCATCGCGGCCGTCGCCGGCGTCCAGCTGTACCGCAAGCTCACCACGACCACGGTCGTGGCCTACTTCT CCGAGACGCTGGCGCTGTATCCCGGCGACCGGGTGCAGATCATGGGCGTGCGGGTGGGTTCGATCGACAAGATCGAGCCG GCCGGCGACAAGATGCGAGTCACGTTGCACTACAACAACAAATACCGTGTCCCGGCGAACGCGACCGCGTCGATCCTCAA CCCCAGCCTGGTGGCCTCGCGCACCATCCAGCTGTCGCCGCCCTACACCGGCGGGCCGGTGCTGCGCGACGGCGCCGTCA TCCCGATCGAGCGCACCCGGGTGCCCGTCGAGTGGGACCAGCTGCGGGACTCCATCAACGCCATCCTGCGCCAGCTCGGC CCCACCCCCCAGCAGCCGGTGGGGCCGTTCGGCGACATCATCGAATCGGCCGCCGACAATCTGTCCGGCAAGGGCAAACA GGTCAACGAGACCCTGAACAGCCTGTCGCAGGCGCTGACCGCGCTCAACGAGGGCCGCGGCGATTTCGTCGCCATCACCA AGAGCCTGGCCCGGTTCGTCACCGCGCTGTACCAGCACAAGCAACAGTTCGTCGCGCTCAACGACAACCTGGCCCAGTTC ACCGACTGGTTCACCCAATCCGACCACCAGGTGAGCGACACCATCGCCCATCTCGACCAGGTGCTGGACGCGGCCCGAAA GTTCGTGAACGACAACGGATCCGCACTGACCCACGACGTCGGCAACCTCGCCGACGTGACCACCACGATCCTGCAACCCG AGCCGCGCGACGGCCTGGAAACCGCGCTGCACGTGCTGCCCACCTTCGCCGGCAACTTCAACAACCTCTACCAGCCGGCG CACAGTTCGCTGGTCGGCCTGTTCGTGTTCCCCAACTTCGCCAACCCGATCCACTTCCTGTGCAGCGCCATTCAGGCCGG CAGCCGGCTGGGCTACCAGGACTCGGCCGAACTGTGCGCACAGTATCTGGCCCCGGTTCTCGACGCCATCAAGTTCAATT ACCCACCGGCCGGCCTGAACCCGTTCAACTCGGCGGCCACGCTGCCCAAGGAGGTGGCTTACTCCGAGGAGCGACTGCGC CCGCCGCCCGGATACAAGGACACCACCGTCCCGGGCATCTTCGCCCGCGACACCCCGTTCTCCCACGGCAACCACGAGCC GGGGTGGGTGGTCGCGCCGGGAATGCAGGGCACCGACGTCCAGCCGTTCACCGCCGGCATGCTCACCCCCGAATCGCTGG CCGAGCTCATGGGTGGCCCGGACGCCGCGCCGCCGCCGCCGGGGGTCACCGCCGCCGGACCGCCGAACGCCTACGACGAG TCGAATCCGCCGTCGCCGCCGTGGTTTTCGCGGCCCACGCCGCCGGGGCCGGGCCGGTGA
Upstream 100 bases:
>100_bases CCCCGCCCGACGTCCCCGGCACCCCGGTGCCGCTGCCGGTGCACGCCCCGCCGGGGGCGCGCACCGAGAACCCGCCCGAC GCGACAGGGGGGAGCACCCG
Downstream 100 bases:
>100_bases TGCGCCGGGTCGCCGTCGCGGGGCGGCGCGCGCTGGTGGTCGCGCTGGCGGCGATGTTGACGTCGTGCACCTGGAGGGGC ATCGCCGACGTGCCGCTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Mce Family Protein; Secreted Protein; MCE-Family D; MCE Family Protein; Mce Family D; MCE-Family Protein; Mce Family Lipoe; Mammalian Cell Entry Related Domain Protein; MCE Family Lipoprotein LprM; MCE Family Lipoprotein; Mce Family F; Mce-Related Protein; MCE-Family; MCE-Family C; Virulence Factor MCE-Like Protein; LOW QUALITY PROTEIN Protein
Number of amino acids: Translated: 499; Mature: 498
Protein sequence:
>499_residues MSTIFDIRNLRLPKVSARVLVIAALAAVFVFIAAVAGVQLYRKLTTTTVVAYFSETLALYPGDRVQIMGVRVGSIDKIEP AGDKMRVTLHYNNKYRVPANATASILNPSLVASRTIQLSPPYTGGPVLRDGAVIPIERTRVPVEWDQLRDSINAILRQLG PTPQQPVGPFGDIIESAADNLSGKGKQVNETLNSLSQALTALNEGRGDFVAITKSLARFVTALYQHKQQFVALNDNLAQF TDWFTQSDHQVSDTIAHLDQVLDAARKFVNDNGSALTHDVGNLADVTTTILQPEPRDGLETALHVLPTFAGNFNNLYQPA HSSLVGLFVFPNFANPIHFLCSAIQAGSRLGYQDSAELCAQYLAPVLDAIKFNYPPAGLNPFNSAATLPKEVAYSEERLR PPPGYKDTTVPGIFARDTPFSHGNHEPGWVVAPGMQGTDVQPFTAGMLTPESLAELMGGPDAAPPPPGVTAAGPPNAYDE SNPPSPPWFSRPTPPGPGR
Sequences:
>Translated_499_residues MSTIFDIRNLRLPKVSARVLVIAALAAVFVFIAAVAGVQLYRKLTTTTVVAYFSETLALYPGDRVQIMGVRVGSIDKIEP AGDKMRVTLHYNNKYRVPANATASILNPSLVASRTIQLSPPYTGGPVLRDGAVIPIERTRVPVEWDQLRDSINAILRQLG PTPQQPVGPFGDIIESAADNLSGKGKQVNETLNSLSQALTALNEGRGDFVAITKSLARFVTALYQHKQQFVALNDNLAQF TDWFTQSDHQVSDTIAHLDQVLDAARKFVNDNGSALTHDVGNLADVTTTILQPEPRDGLETALHVLPTFAGNFNNLYQPA HSSLVGLFVFPNFANPIHFLCSAIQAGSRLGYQDSAELCAQYLAPVLDAIKFNYPPAGLNPFNSAATLPKEVAYSEERLR PPPGYKDTTVPGIFARDTPFSHGNHEPGWVVAPGMQGTDVQPFTAGMLTPESLAELMGGPDAAPPPPGVTAAGPPNAYDE SNPPSPPWFSRPTPPGPGR >Mature_498_residues STIFDIRNLRLPKVSARVLVIAALAAVFVFIAAVAGVQLYRKLTTTTVVAYFSETLALYPGDRVQIMGVRVGSIDKIEPA GDKMRVTLHYNNKYRVPANATASILNPSLVASRTIQLSPPYTGGPVLRDGAVIPIERTRVPVEWDQLRDSINAILRQLGP TPQQPVGPFGDIIESAADNLSGKGKQVNETLNSLSQALTALNEGRGDFVAITKSLARFVTALYQHKQQFVALNDNLAQFT DWFTQSDHQVSDTIAHLDQVLDAARKFVNDNGSALTHDVGNLADVTTTILQPEPRDGLETALHVLPTFAGNFNNLYQPAH SSLVGLFVFPNFANPIHFLCSAIQAGSRLGYQDSAELCAQYLAPVLDAIKFNYPPAGLNPFNSAATLPKEVAYSEERLRP PPGYKDTTVPGIFARDTPFSHGNHEPGWVVAPGMQGTDVQPFTAGMLTPESLAELMGGPDAAPPPPGVTAAGPPNAYDES NPPSPPWFSRPTPPGPGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53716; Mature: 53585
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTIFDIRNLRLPKVSARVLVIAALAAVFVFIAAVAGVQLYRKLTTTTVVAYFSETLALY CCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PGDRVQIMGVRVGSIDKIEPAGDKMRVTLHYNNKYRVPANATASILNPSLVASRTIQLSP CCCEEEEEEEEECCCCCCCCCCCEEEEEEEECCEEECCCCCHHHHCCCHHHHCCEEEECC PYTGGPVLRDGAVIPIERTRVPVEWDQLRDSINAILRQLGPTPQQPVGPFGDIIESAADN CCCCCCEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC LSGKGKQVNETLNSLSQALTALNEGRGDFVAITKSLARFVTALYQHKQQFVALNDNLAQF CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHH TDWFTQSDHQVSDTIAHLDQVLDAARKFVNDNGSALTHDVGNLADVTTTILQPEPRDGLE HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHH TALHVLPTFAGNFNNLYQPAHSSLVGLFVFPNFANPIHFLCSAIQAGSRLGYQDSAELCA HHHHHHHHHCCCHHHHHCHHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH QYLAPVLDAIKFNYPPAGLNPFNSAATLPKEVAYSEERLRPPPGYKDTTVPGIFARDTPF HHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHCCHHHCCCCCCCCCCCCCCEEECCCCC SHGNHEPGWVVAPGMQGTDVQPFTAGMLTPESLAELMGGPDAAPPPPGVTAAGPPNAYDE CCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC SNPPSPPWFSRPTPPGPGR CCCCCCCCCCCCCCCCCCC >Mature Secondary Structure STIFDIRNLRLPKVSARVLVIAALAAVFVFIAAVAGVQLYRKLTTTTVVAYFSETLALY CCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PGDRVQIMGVRVGSIDKIEPAGDKMRVTLHYNNKYRVPANATASILNPSLVASRTIQLSP CCCEEEEEEEEECCCCCCCCCCCEEEEEEEECCEEECCCCCHHHHCCCHHHHCCEEEECC PYTGGPVLRDGAVIPIERTRVPVEWDQLRDSINAILRQLGPTPQQPVGPFGDIIESAADN CCCCCCEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC LSGKGKQVNETLNSLSQALTALNEGRGDFVAITKSLARFVTALYQHKQQFVALNDNLAQF CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCHHHH TDWFTQSDHQVSDTIAHLDQVLDAARKFVNDNGSALTHDVGNLADVTTTILQPEPRDGLE HHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCHHHH TALHVLPTFAGNFNNLYQPAHSSLVGLFVFPNFANPIHFLCSAIQAGSRLGYQDSAELCA HHHHHHHHHCCCHHHHHCHHHHCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHH QYLAPVLDAIKFNYPPAGLNPFNSAATLPKEVAYSEERLRPPPGYKDTTVPGIFARDTPF HHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHCCHHHCCCCCCCCCCCCCCEEECCCCC SHGNHEPGWVVAPGMQGTDVQPFTAGMLTPESLAELMGGPDAAPPPPGVTAAGPPNAYDE CCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC SNPPSPPWFSRPTPPGPGR CCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA