Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
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Accession | NC_002944 |
Length | 4,829,781 |
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The map label for this gene is 41410165
Identifier: 41410165
GI number: 41410165
Start: 4530659
End: 4531975
Strand: Reverse
Name: 41410165
Synonym: MAP4067c
Alternate gene names: NA
Gene position: 4531975-4530659 (Counterclockwise)
Preceding gene: 41410166
Following gene: 41410162
Centisome position: 93.83
GC content: 68.64
Gene sequence:
>1317_bases ATGCGCGCAGCCCGGCGCTCCACGGCGCGACGCCGACCGGCCGCGAGCCGAGGCGCCGCGCTGGCGGCGCTGGGGTGCCT GGCCCTGGCGTCGTGTTCGGACACCGTGCCCGCGCCGCCGCTCAGCGCGACCACCTCGACGTCGAAGTCCACGTCCAAAG CCGGGCCCGATTCGGCCGCCGCACCCTCGATGACGGGCCCGCTGGAAAAGGACTGGAAAAGCTACGGCGGTACCGCGTAT TTCGGTTGCCCGCAACGGTTTTCGTTTAGCAAGTCCGCGCTGCAGGACATCCGGCCGAAGGTGTTCGACCCGAAGACCGG ACAGTACCTGGCGCCCGGTGTCCCGTCCGTTCCGGCCGGCGAGACGGTGACCGGCGCGATCTGCGCGCTGACGGGCACGG CAGAGCAGCTGCGGGTGGTGTACATCGTGACCACCGCCGCCAAAACTATCGGCTACGTTTTCGACCTGACGAGCGGCCAG CCGCTGGTCACCAAGGACCTGCAGGCACCGGCCCCCGATCAGCGGCTGGCCGCGCCGAAGGACTGGTCCCTGGCCTCGAC CGCCTCGGGCGTGGCGTGGCTGAACGCCGTCACCGACGGCCACGCCGCCGCGGCGCCACCGCGGACCGTGGTGCTGTCGG GTCAGGACCTGTCGACGCTGTGGAGCGATCCAGAGCCCGCCCGGGTCTGGCCGGACGTGCTGGCGTTCACCCGCAGCGGC GATCCCGCCCAGACTCCGGGAACCCGGCTGCGCCTGCCCGGCGGGGAAGAGATCTACCAGGACAACGACGTCGTGTCCGT CGACGCCGAATTGACCGACGGCTCAAGCAAATTGGTGCAGCTCACCCGTCGGGATCCGGCCAACCCCGCCGAGGTGTCGA CGCTGTTCTATGACCTCGACGCCAAGTCGGTCATCAAAATCGGTGACTCCGAACGGATTTCGGGAGGCGGGCTGACCGCG GCGCTCTCGGACGGGAAACTGTTCGTCGACGGCCACAACCGCGACAATTCCCAATTCGGGTTCGGGGTGTGGAACCTGCG CGGCCAGCAGTGGGACTTTCTGAAGAACCGCGACGACGCCAGGAAGCTGTCGCTTGCCAAGGTGGCGTTCTTCGAAGACC ACCTCTACCTCACCGGCAGCGGCGGAACGTTCTCCGTCATCGCCCTGCCCGCGGGAGATCCCGTCGCATCCAACTGGGCG CTGCGCCCGTTCCAGCGGATCTCCGGATGGACACTGGTGTGCCGCGGCGAGACCGCACCGGGCGCCAACGGGGAGTGCAA GGAGATTCTCAATGACGTTGTCAAGCCGCCGCGGTAG
Upstream 100 bases:
>100_bases CCATCGAGTTCGACCGATAATCGCCGCGGGGCGCACGAGTCGCGCAACGGGCCGGGGCGGCCGTACGCTCCTGTGGTTAC GAACTCACTGGGGGATTTTC
Downstream 100 bases:
>100_bases TGGTTGCGGGGTGGTAGACAGCGTGGTCGCGCAGCATGGCCCACAGGACGTTGAGGCGGCGGCGGGCCAGGGCGAGGACG GCTTGGGTGTGGCGTTTTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 438; Mature: 438
Protein sequence:
>438_residues MRAARRSTARRRPAASRGAALAALGCLALASCSDTVPAPPLSATTSTSKSTSKAGPDSAAAPSMTGPLEKDWKSYGGTAY FGCPQRFSFSKSALQDIRPKVFDPKTGQYLAPGVPSVPAGETVTGAICALTGTAEQLRVVYIVTTAAKTIGYVFDLTSGQ PLVTKDLQAPAPDQRLAAPKDWSLASTASGVAWLNAVTDGHAAAAPPRTVVLSGQDLSTLWSDPEPARVWPDVLAFTRSG DPAQTPGTRLRLPGGEEIYQDNDVVSVDAELTDGSSKLVQLTRRDPANPAEVSTLFYDLDAKSVIKIGDSERISGGGLTA ALSDGKLFVDGHNRDNSQFGFGVWNLRGQQWDFLKNRDDARKLSLAKVAFFEDHLYLTGSGGTFSVIALPAGDPVASNWA LRPFQRISGWTLVCRGETAPGANGECKEILNDVVKPPR
Sequences:
>Translated_438_residues MRAARRSTARRRPAASRGAALAALGCLALASCSDTVPAPPLSATTSTSKSTSKAGPDSAAAPSMTGPLEKDWKSYGGTAY FGCPQRFSFSKSALQDIRPKVFDPKTGQYLAPGVPSVPAGETVTGAICALTGTAEQLRVVYIVTTAAKTIGYVFDLTSGQ PLVTKDLQAPAPDQRLAAPKDWSLASTASGVAWLNAVTDGHAAAAPPRTVVLSGQDLSTLWSDPEPARVWPDVLAFTRSG DPAQTPGTRLRLPGGEEIYQDNDVVSVDAELTDGSSKLVQLTRRDPANPAEVSTLFYDLDAKSVIKIGDSERISGGGLTA ALSDGKLFVDGHNRDNSQFGFGVWNLRGQQWDFLKNRDDARKLSLAKVAFFEDHLYLTGSGGTFSVIALPAGDPVASNWA LRPFQRISGWTLVCRGETAPGANGECKEILNDVVKPPR >Mature_438_residues MRAARRSTARRRPAASRGAALAALGCLALASCSDTVPAPPLSATTSTSKSTSKAGPDSAAAPSMTGPLEKDWKSYGGTAY FGCPQRFSFSKSALQDIRPKVFDPKTGQYLAPGVPSVPAGETVTGAICALTGTAEQLRVVYIVTTAAKTIGYVFDLTSGQ PLVTKDLQAPAPDQRLAAPKDWSLASTASGVAWLNAVTDGHAAAAPPRTVVLSGQDLSTLWSDPEPARVWPDVLAFTRSG DPAQTPGTRLRLPGGEEIYQDNDVVSVDAELTDGSSKLVQLTRRDPANPAEVSTLFYDLDAKSVIKIGDSERISGGGLTA ALSDGKLFVDGHNRDNSQFGFGVWNLRGQQWDFLKNRDDARKLSLAKVAFFEDHLYLTGSGGTFSVIALPAGDPVASNWA LRPFQRISGWTLVCRGETAPGANGECKEILNDVVKPPR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46262; Mature: 46262
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAARRSTARRRPAASRGAALAALGCLALASCSDTVPAPPLSATTSTSKSTSKAGPDSAA CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APSMTGPLEKDWKSYGGTAYFGCPQRFSFSKSALQDIRPKVFDPKTGQYLAPGVPSVPAG CCCCCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCC ETVTGAICALTGTAEQLRVVYIVTTAAKTIGYVFDLTSGQPLVTKDLQAPAPDQRLAAPK CCCCCEEEEEECCHHHEEEEEEEEEHHHHEEEEEECCCCCEEEECCCCCCCCCHHCCCCC DWSLASTASGVAWLNAVTDGHAAAAPPRTVVLSGQDLSTLWSDPEPARVWPDVLAFTRSG CCCCHHHCCCEEEEEEECCCCCCCCCCCEEEECCCCHHHHCCCCCCCHHCHHHHHEECCC DPAQTPGTRLRLPGGEEIYQDNDVVSVDAELTDGSSKLVQLTRRDPANPAEVSTLFYDLD CCCCCCCCEEECCCCCHHCCCCCEEEEEEEECCCCHHHHEEECCCCCCHHHEEEEEEECC AKSVIKIGDSERISGGGLTAALSDGKLFVDGHNRDNSQFGFGVWNLRGQQWDFLKNRDDA CCEEEEECCCCEECCCCEEEEECCCEEEEECCCCCCCEECEEEEECCCCCCHHHCCCCHH RKLSLAKVAFFEDHLYLTGSGGTFSVIALPAGDPVASNWALRPFQRISGWTLVCRGETAP HHHHHHEEEEEECEEEEEECCCEEEEEEECCCCCCCCCCCCCHHHHCCCCEEEEECCCCC GANGECKEILNDVVKPPR CCCCHHHHHHHHHHCCCC >Mature Secondary Structure MRAARRSTARRRPAASRGAALAALGCLALASCSDTVPAPPLSATTSTSKSTSKAGPDSAA CCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APSMTGPLEKDWKSYGGTAYFGCPQRFSFSKSALQDIRPKVFDPKTGQYLAPGVPSVPAG CCCCCCCHHHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCCCCCCCCCEECCCCCCCCCC ETVTGAICALTGTAEQLRVVYIVTTAAKTIGYVFDLTSGQPLVTKDLQAPAPDQRLAAPK CCCCCEEEEEECCHHHEEEEEEEEEHHHHEEEEEECCCCCEEEECCCCCCCCCHHCCCCC DWSLASTASGVAWLNAVTDGHAAAAPPRTVVLSGQDLSTLWSDPEPARVWPDVLAFTRSG CCCCHHHCCCEEEEEEECCCCCCCCCCCEEEECCCCHHHHCCCCCCCHHCHHHHHEECCC DPAQTPGTRLRLPGGEEIYQDNDVVSVDAELTDGSSKLVQLTRRDPANPAEVSTLFYDLD CCCCCCCCEEECCCCCHHCCCCCEEEEEEEECCCCHHHHEEECCCCCCHHHEEEEEEECC AKSVIKIGDSERISGGGLTAALSDGKLFVDGHNRDNSQFGFGVWNLRGQQWDFLKNRDDA CCEEEEECCCCEECCCCEEEEECCCEEEEECCCCCCCEECEEEEECCCCCCHHHCCCCHH RKLSLAKVAFFEDHLYLTGSGGTFSVIALPAGDPVASNWALRPFQRISGWTLVCRGETAP HHHHHHEEEEEECEEEEEECCCEEEEEEECCCCCCCCCCCCCHHHHCCCCEEEEECCCCC GANGECKEILNDVVKPPR CCCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA