| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is ydfG [C]
Identifier: 41410075
GI number: 41410075
Start: 4435599
End: 4436348
Strand: Reverse
Name: ydfG [C]
Synonym: MAP3977c
Alternate gene names: 41410075
Gene position: 4436348-4435599 (Counterclockwise)
Preceding gene: 41410082
Following gene: 41410072
Centisome position: 91.85
GC content: 69.73
Gene sequence:
>750_bases ATGGTTGGAACTGGCAGGAATGAACGCGTCGCGGTGGTCACCGGGGCCAGCTCGGGAATCGGCGAGGCAACCGCCCGAAC CCTGGCTGCACAGGGCTTTCACGTCGTCGCGGTGGCGCGGCGGGCCGAGCGGATCCACGCCCTGGCCAACGAGATCGGCG GTACCGCCATTGTGGCCGATGTCACAGACGACGCCGCGGTGGCGGCGCTGGCGAGCAAATTGAGCCGGGTCGACGTGCTG GTCAACAACGCCGGCGGAGCCCGCGGCCTGGAACCGGTCGCCGAGGCCGACCTCGAGCACTGGCGGTGGATGTGGGAGAC CAACGTGATCGGCACGCTGCGGGTCACCCGCGCGCTGCTGCCCAAGCTGGTCGATTCCGGCGACGGACTGATCGTCACCG TGACTTCCGTTGCGGCACTTGAGGTTTACGACGGCGGCGCCGGCTACACGGCTGCGAAGCACGGGCAGGGGGCGTTGCAC CGCACGCTGCGCGGCGAGCTGCTGGGCAAGCCCGTGCGGCTGACCGAGATCGCCCCGGGCGCAGTGGAAACCGAGTTCTC GCTGGTGCGCTTCGACGGCGACCAACAACGCGCCGACGCCGTCTACACCGGCATCACCCCGCTGGTGGCGGCCGACGTGG CCGAGGTGATCGGGTTCGTCGCGTCACGACCGGCGCACGTCAACCTGGATCTGATCGTGATGAAGCCGCGCGATCAGGCG TCGGCCAGCCGGTTCAACCGCCGGGGGTAG
Upstream 100 bases:
>100_bases CAACACGCACCCGCCGCGCACAGACACGCGGCGGTGGTGATGTTGGACAGAGCGCTGAGGTGCACACGCAAAATTTAGCA CGTTCACTAAGGTTGTTTCG
Downstream 100 bases:
>100_bases CCGGGCCGGTGCTGGCCGGCGTGGTCGTCGACGTGGTCGGCGTGCCCGACAGGGTGGGCGCGTTGGACGGCGTGACCGGC GCGGTCACCGGGATCTGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 249; Mature: 249
Protein sequence:
>249_residues MVGTGRNERVAVVTGASSGIGEATARTLAAQGFHVVAVARRAERIHALANEIGGTAIVADVTDDAAVAALASKLSRVDVL VNNAGGARGLEPVAEADLEHWRWMWETNVIGTLRVTRALLPKLVDSGDGLIVTVTSVAALEVYDGGAGYTAAKHGQGALH RTLRGELLGKPVRLTEIAPGAVETEFSLVRFDGDQQRADAVYTGITPLVAADVAEVIGFVASRPAHVNLDLIVMKPRDQA SASRFNRRG
Sequences:
>Translated_249_residues MVGTGRNERVAVVTGASSGIGEATARTLAAQGFHVVAVARRAERIHALANEIGGTAIVADVTDDAAVAALASKLSRVDVL VNNAGGARGLEPVAEADLEHWRWMWETNVIGTLRVTRALLPKLVDSGDGLIVTVTSVAALEVYDGGAGYTAAKHGQGALH RTLRGELLGKPVRLTEIAPGAVETEFSLVRFDGDQQRADAVYTGITPLVAADVAEVIGFVASRPAHVNLDLIVMKPRDQA SASRFNRRG >Mature_249_residues MVGTGRNERVAVVTGASSGIGEATARTLAAQGFHVVAVARRAERIHALANEIGGTAIVADVTDDAAVAALASKLSRVDVL VNNAGGARGLEPVAEADLEHWRWMWETNVIGTLRVTRALLPKLVDSGDGLIVTVTSVAALEVYDGGAGYTAAKHGQGALH RTLRGELLGKPVRLTEIAPGAVETEFSLVRFDGDQQRADAVYTGITPLVAADVAEVIGFVASRPAHVNLDLIVMKPRDQA SASRFNRRG
Specific function: Unknown
COG id: COG4221
COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=34.6613545816733, Blast_Score=117, Evalue=1e-26, Organism=Homo sapiens, GI7706318, Length=191, Percent_Identity=34.0314136125654, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI20149619, Length=230, Percent_Identity=29.5652173913043, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI32483357, Length=228, Percent_Identity=28.9473684210526, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI40254992, Length=187, Percent_Identity=32.0855614973262, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI7657478, Length=189, Percent_Identity=34.9206349206349, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI40548397, Length=258, Percent_Identity=27.906976744186, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI214010158, Length=258, Percent_Identity=27.906976744186, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI214010156, Length=258, Percent_Identity=27.906976744186, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI22758144, Length=258, Percent_Identity=27.906976744186, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI4557649, Length=183, Percent_Identity=30.6010928961749, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI5031737, Length=201, Percent_Identity=31.8407960199005, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI19923817, Length=240, Percent_Identity=25.8333333333333, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=32.3076923076923, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI4758504, Length=194, Percent_Identity=32.9896907216495, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI10190704, Length=203, Percent_Identity=28.0788177339901, Blast_Score=65, Evalue=4e-11, Organism=Escherichia coli, GI1787820, Length=240, Percent_Identity=40, Blast_Score=164, Evalue=5e-42, Organism=Escherichia coli, GI1787335, Length=241, Percent_Identity=32.7800829875519, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI87082100, Length=189, Percent_Identity=35.978835978836, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1787905, Length=186, Percent_Identity=34.4086021505376, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1786701, Length=187, Percent_Identity=32.0855614973262, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788459, Length=190, Percent_Identity=30, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786812, Length=239, Percent_Identity=30.9623430962343, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI2367175, Length=238, Percent_Identity=31.0924369747899, Blast_Score=60, Evalue=1e-10, Organism=Caenorhabditis elegans, GI17560332, Length=245, Percent_Identity=30.2040816326531, Blast_Score=93, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562910, Length=245, Percent_Identity=29.3877551020408, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI71997402, Length=188, Percent_Identity=32.9787234042553, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17560676, Length=199, Percent_Identity=29.1457286432161, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=30.1526717557252, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17559104, Length=245, Percent_Identity=28.9795918367347, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17570069, Length=197, Percent_Identity=31.4720812182741, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI71994600, Length=235, Percent_Identity=27.6595744680851, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71994604, Length=233, Percent_Identity=28.3261802575107, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17561402, Length=243, Percent_Identity=28.8065843621399, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17538182, Length=190, Percent_Identity=32.1052631578947, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17563726, Length=193, Percent_Identity=27.4611398963731, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17565030, Length=246, Percent_Identity=29.6747967479675, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17538486, Length=197, Percent_Identity=28.4263959390863, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17560150, Length=242, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17538480, Length=259, Percent_Identity=25.8687258687259, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17551412, Length=245, Percent_Identity=28.1632653061224, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17562908, Length=245, Percent_Identity=27.7551020408163, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI72000259, Length=239, Percent_Identity=28.4518828451883, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI115534660, Length=212, Percent_Identity=27.8301886792453, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17562904, Length=256, Percent_Identity=27.34375, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71982365, Length=175, Percent_Identity=30.2857142857143, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17508895, Length=188, Percent_Identity=26.5957446808511, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=254, Percent_Identity=35.0393700787402, Blast_Score=139, Evalue=3e-34, Organism=Saccharomyces cerevisiae, GI6322067, Length=190, Percent_Identity=31.5789473684211, Blast_Score=69, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=196, Percent_Identity=29.5918367346939, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007236, Length=247, Percent_Identity=34.412955465587, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI23397609, Length=232, Percent_Identity=33.6206896551724, Blast_Score=94, Evalue=6e-20, Organism=Drosophila melanogaster, GI24641232, Length=254, Percent_Identity=30.7086614173228, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI24641388, Length=250, Percent_Identity=32.8, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI24648693, Length=251, Percent_Identity=31.0756972111554, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI21355889, Length=251, Percent_Identity=31.0756972111554, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI281364494, Length=247, Percent_Identity=29.1497975708502, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI116007234, Length=253, Percent_Identity=32.8063241106719, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=28.1407035175879, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24643142, Length=233, Percent_Identity=30.0429184549356, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24648944, Length=245, Percent_Identity=31.8367346938775, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI21357041, Length=189, Percent_Identity=32.8042328042328, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI28571387, Length=250, Percent_Identity=30, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI28571526, Length=192, Percent_Identity=34.8958333333333, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24663911, Length=248, Percent_Identity=31.0483870967742, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI116007238, Length=176, Percent_Identity=33.5227272727273, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24580925, Length=204, Percent_Identity=29.9019607843137, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24584748, Length=187, Percent_Identity=31.5508021390374, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI161076933, Length=187, Percent_Identity=31.5508021390374, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21355319, Length=230, Percent_Identity=25.2173913043478, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24644339, Length=188, Percent_Identity=30.3191489361702, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24639444, Length=237, Percent_Identity=30.8016877637131, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI17737361, Length=193, Percent_Identity=31.0880829015544, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357673, Length=174, Percent_Identity=31.6091954022989, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24584752, Length=188, Percent_Identity=29.7872340425532, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26088; Mature: 26088
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVGTGRNERVAVVTGASSGIGEATARTLAAQGFHVVAVARRAERIHALANEIGGTAIVAD CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCEEEEEE VTDDAAVAALASKLSRVDVLVNNAGGARGLEPVAEADLEHWRWMWETNVIGTLRVTRALL CCCHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHEEEEECCCCHHHHHHHHHH PKLVDSGDGLIVTVTSVAALEVYDGGAGYTAAKHGQGALHRTLRGELLGKPVRLTEIAPG HHHHCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCC AVETEFSLVRFDGDQQRADAVYTGITPLVAADVAEVIGFVASRPAHVNLDLIVMKPRDQA CCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCH SASRFNRRG HHHHHCCCC >Mature Secondary Structure MVGTGRNERVAVVTGASSGIGEATARTLAAQGFHVVAVARRAERIHALANEIGGTAIVAD CCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCEEEEEE VTDDAAVAALASKLSRVDVLVNNAGGARGLEPVAEADLEHWRWMWETNVIGTLRVTRALL CCCHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHEEEEECCCCHHHHHHHHHH PKLVDSGDGLIVTVTSVAALEVYDGGAGYTAAKHGQGALHRTLRGELLGKPVRLTEIAPG HHHHCCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCC AVETEFSLVRFDGDQQRADAVYTGITPLVAADVAEVIGFVASRPAHVNLDLIVMKPRDQA CCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCH SASRFNRRG HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]