Click here to switch to the map view.

The map label for this gene is allB [C]

Identifier: 41410038

GI number: 41410038

Start: 4399958

End: 4401688

Strand: Reverse

Name: allB [C]

Synonym: MAP3940c

Alternate gene names: 41410038

Gene position: 4401688-4399958 (Counterclockwise)

Preceding gene: 41410042

Following gene: 41410037

Centisome position: 91.14

GC content: 70.71

Gene sequence:

>1731_bases
ATGACTTACGACCTCATCATCCGTAATGGCAGCATCGTCGACGGGCTGGGGGGTGAGCCGTACGTCGGCGACGTGGCGGT
GCGCGACGGCGTGATCGCGGCGGTCGGCGCGGTGAACGGGGCCACCGCGAACCGCGAGATCGACGCCACCGGGCGGCTGG
TCACGCCAGGCTTCGTGGACCTGCACACCCACTACGACGGCCAGGCCGTCTGGTCGGAGCGGCTGACCCCGTCGTCGGCG
CACGGGGTGACCACGGTGGTGATGGGCAACTGCGGCGTCGGCTTCGCCCCGTGCCGCCAGTCCGACCACGACGTGCTGGT
CGACGTGATGGCCGGTGTCGAGGACATCCCCGGCGTCGTGATGACCGACGGCCTGCCGTGGACGTGGGAGACGTTCCCCG
AATACCTGGACACCCTCGAGGCCGGCAAGCGTGACATCGACGTGGCCGCCTATCTGCCGCATTCGCCGCTGCGGGTGTAC
GTGATGGGTCAGCGCGGCGCCGACCGGGAGCCGGCCACCGCGGAGGACCTGGCGAAGATGCGGGCGCTGGCCAAGGAGGC
GGTCGAGGTGGGCGCACTGGGTTTCGCCTCGTCGCGGCTGACCATCCACAAGACCGAAAGCGGTTCTCCTATCCCGAGTT
ACGACGCCGCCCGGGAGGAGATCGAGCAGATCGCCCGGGGTGTGGTGGACGGCGGCGGCGGCCTGCTGCAGTTCGTTCCC
GACATCCCGGCCGACGGCTACCAGCCGGTGCTGCAGACGGTGTTCGACGTCGCCGAGGACGTCGGCCTGCCGCTCACCTT
CACCCTCGTCGTCGCCAACTCCGGTGACCCGACGTGGCCGGACGCCATCACGATGATCGAGAAGGCCAACGCGGCGGGCG
GCGACATCACCGCGCAGCTGTTGCCGCGCCCGATCGGGTTGATCATCGGATTGCAGTTGAGCGCAAACCCATTCGTGCTC
TACCCCAGCTACCGCGAGATCGCGCACCTGCCGCTGGCCGAGCGGGTCGCACAGATGCGCAAGCCCGAGGTGCGGGCCCG
CATCCTGGCCGACAAGCCCGGCGAGGGCCACCCGATCCTGTACGTGGCCCAGATGTGGGACTGGATCTACCCGCTCGGCG
ACAACCCCGATTACGAGCCGGACCCGTCGACGTCCATCGCGGCCCGGGCCCGCGCCCGCGGCGTGGATCCGATGGAGGAG
GCCTACGACCGGCTGCTCGACGACGACGGCCGGGCCATGCTGCTGGTGGCGACCAGCAACCTGCAGGGCAACTCGCTGGA
CACCGTCGGGGAGCTGCTGCACCGCGACGATGTGGTGCTGGGTCTGGGCGACGGCGGCGCGCACTACGGGATGATCTGCG
ACGCCAGCTACTCGACCTACTTCCTGACGCACTGGGCGCGCGACCGAAAGTCGGGGCGGTTCAGCGTGGCCGACGCGGTG
CGCCGGCTCACCTCGGTGCCCGCGCGGGTGGCAGGGCTGGGCGACCGCGGCCGCATCGCGGTGGGCTACAAGGCCGACCT
CAACGTCATCGACCACGCCGCGCTGCGGCTGCACAAGCCGGTGATCAGTCACGACCTGCCGGCGGGCGGGCGGCGCCTGG
ATCAGACCGCCGACGGCTACGTCGCCACCATCGTCTCCGGGGAGATCATCGCCGAGAACGGGGTGCCCACCGCCGCGCGT
CCGGGCAAGTTGGTGCGCGGCCGCCGGCCCGGCCCGGCACCCTTGCGATAA

Upstream 100 bases:

>100_bases
AACCGCTGAGATTCCGCGTAGTTGGCGCAGTTGATTCCCACGTGATCGATCACGGAACAGATCCTGGCACGACCGGCGGG
AACGGTCGTAGATTGTTTGA

Downstream 100 bases:

>100_bases
CGCCCCAAAAGTGGCATATACCAGCTAAGTTGGGTCCGTGACGAACCCGCATTTTGCGTGGTTGCCGCCAGAAGTCAACT
CGGCACTAATTTATTCCGGT

Product: hypothetical protein

Products: Allantoate; H+ [C]

Alternate protein names: NA

Number of amino acids: Translated: 576; Mature: 575

Protein sequence:

>576_residues
MTYDLIIRNGSIVDGLGGEPYVGDVAVRDGVIAAVGAVNGATANREIDATGRLVTPGFVDLHTHYDGQAVWSERLTPSSA
HGVTTVVMGNCGVGFAPCRQSDHDVLVDVMAGVEDIPGVVMTDGLPWTWETFPEYLDTLEAGKRDIDVAAYLPHSPLRVY
VMGQRGADREPATAEDLAKMRALAKEAVEVGALGFASSRLTIHKTESGSPIPSYDAAREEIEQIARGVVDGGGGLLQFVP
DIPADGYQPVLQTVFDVAEDVGLPLTFTLVVANSGDPTWPDAITMIEKANAAGGDITAQLLPRPIGLIIGLQLSANPFVL
YPSYREIAHLPLAERVAQMRKPEVRARILADKPGEGHPILYVAQMWDWIYPLGDNPDYEPDPSTSIAARARARGVDPMEE
AYDRLLDDDGRAMLLVATSNLQGNSLDTVGELLHRDDVVLGLGDGGAHYGMICDASYSTYFLTHWARDRKSGRFSVADAV
RRLTSVPARVAGLGDRGRIAVGYKADLNVIDHAALRLHKPVISHDLPAGGRRLDQTADGYVATIVSGEIIAENGVPTAAR
PGKLVRGRRPGPAPLR

Sequences:

>Translated_576_residues
MTYDLIIRNGSIVDGLGGEPYVGDVAVRDGVIAAVGAVNGATANREIDATGRLVTPGFVDLHTHYDGQAVWSERLTPSSA
HGVTTVVMGNCGVGFAPCRQSDHDVLVDVMAGVEDIPGVVMTDGLPWTWETFPEYLDTLEAGKRDIDVAAYLPHSPLRVY
VMGQRGADREPATAEDLAKMRALAKEAVEVGALGFASSRLTIHKTESGSPIPSYDAAREEIEQIARGVVDGGGGLLQFVP
DIPADGYQPVLQTVFDVAEDVGLPLTFTLVVANSGDPTWPDAITMIEKANAAGGDITAQLLPRPIGLIIGLQLSANPFVL
YPSYREIAHLPLAERVAQMRKPEVRARILADKPGEGHPILYVAQMWDWIYPLGDNPDYEPDPSTSIAARARARGVDPMEE
AYDRLLDDDGRAMLLVATSNLQGNSLDTVGELLHRDDVVLGLGDGGAHYGMICDASYSTYFLTHWARDRKSGRFSVADAV
RRLTSVPARVAGLGDRGRIAVGYKADLNVIDHAALRLHKPVISHDLPAGGRRLDQTADGYVATIVSGEIIAENGVPTAAR
PGKLVRGRRPGPAPLR
>Mature_575_residues
TYDLIIRNGSIVDGLGGEPYVGDVAVRDGVIAAVGAVNGATANREIDATGRLVTPGFVDLHTHYDGQAVWSERLTPSSAH
GVTTVVMGNCGVGFAPCRQSDHDVLVDVMAGVEDIPGVVMTDGLPWTWETFPEYLDTLEAGKRDIDVAAYLPHSPLRVYV
MGQRGADREPATAEDLAKMRALAKEAVEVGALGFASSRLTIHKTESGSPIPSYDAAREEIEQIARGVVDGGGGLLQFVPD
IPADGYQPVLQTVFDVAEDVGLPLTFTLVVANSGDPTWPDAITMIEKANAAGGDITAQLLPRPIGLIIGLQLSANPFVLY
PSYREIAHLPLAERVAQMRKPEVRARILADKPGEGHPILYVAQMWDWIYPLGDNPDYEPDPSTSIAARARARGVDPMEEA
YDRLLDDDGRAMLLVATSNLQGNSLDTVGELLHRDDVVLGLGDGGAHYGMICDASYSTYFLTHWARDRKSGRFSVADAVR
RLTSVPARVAGLGDRGRIAVGYKADLNVIDHAALRLHKPVISHDLPAGGRRLDQTADGYVATIVSGEIIAENGVPTAARP
GKLVRGRRPGPAPLR

Specific function: Involved In The Anaerobic Utilization Of Allantoin. [C]

COG id: COG3653

COG function: function code Q; N-acyl-D-aspartate/D-glutamate deacylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acyl-D-amino-acid deacylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013108
- InterPro:   IPR011059 [H]

Pfam domain/function: PF07969 Amidohydro_3 [H]

EC number: 3.5.2.5 [C]

Molecular weight: Translated: 61629; Mature: 61498

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYDLIIRNGSIVDGLGGEPYVGDVAVRDGVIAAVGAVNGATANREIDATGRLVTPGFVD
CCEEEEEECCCEEECCCCCCCCCCEECCCCEEEEEECCCCCCCCCEECCCCCEECCCEEE
LHTHYDGQAVWSERLTPSSAHGVTTVVMGNCGVGFAPCRQSDHDVLVDVMAGVEDIPGVV
EEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCHHHCCCEE
MTDGLPWTWETFPEYLDTLEAGKRDIDVAAYLPHSPLRVYVMGQRGADREPATAEDLAKM
EECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHH
RALAKEAVEVGALGFASSRLTIHKTESGSPIPSYDAAREEIEQIARGVVDGGGGLLQFVP
HHHHHHHHHHHCCEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECC
DIPADGYQPVLQTVFDVAEDVGLPLTFTLVVANSGDPTWPDAITMIEKANAAGGDITAQL
CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCCCCEEHHH
LPRPIGLIIGLQLSANPFVLYPSYREIAHLPLAERVAQMRKPEVRARILADKPGEGHPIL
CCCCEEEEEEEEECCCCEEECCCHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCEE
YVAQMWDWIYPLGDNPDYEPDPSTSIAARARARGVDPMEEAYDRLLDDDGRAMLLVATSN
EEEEHHHHHEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECC
LQGNSLDTVGELLHRDDVVLGLGDGGAHYGMICDASYSTYFLTHWARDRKSGRFSVADAV
CCCCCHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCEEEEEHHHHHCCCCCCHHHHHH
RRLTSVPARVAGLGDRGRIAVGYKADLNVIDHAALRLHKPVISHDLPAGGRRLDQTADGY
HHHHHCCHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCE
VATIVSGEIIAENGVPTAARPGKLVRGRRPGPAPLR
EEEEECCEEEECCCCCCCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
TYDLIIRNGSIVDGLGGEPYVGDVAVRDGVIAAVGAVNGATANREIDATGRLVTPGFVD
CEEEEEECCCEEECCCCCCCCCCEECCCCEEEEEECCCCCCCCCEECCCCCEECCCEEE
LHTHYDGQAVWSERLTPSSAHGVTTVVMGNCGVGFAPCRQSDHDVLVDVMAGVEDIPGVV
EEECCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHCHHHCCCEE
MTDGLPWTWETFPEYLDTLEAGKRDIDVAAYLPHSPLRVYVMGQRGADREPATAEDLAKM
EECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHH
RALAKEAVEVGALGFASSRLTIHKTESGSPIPSYDAAREEIEQIARGVVDGGGGLLQFVP
HHHHHHHHHHHCCEEECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECC
DIPADGYQPVLQTVFDVAEDVGLPLTFTLVVANSGDPTWPDAITMIEKANAAGGDITAQL
CCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCCCCEEHHH
LPRPIGLIIGLQLSANPFVLYPSYREIAHLPLAERVAQMRKPEVRARILADKPGEGHPIL
CCCCEEEEEEEEECCCCEEECCCHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCEE
YVAQMWDWIYPLGDNPDYEPDPSTSIAARARARGVDPMEEAYDRLLDDDGRAMLLVATSN
EEEEHHHHHEECCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEECC
LQGNSLDTVGELLHRDDVVLGLGDGGAHYGMICDASYSTYFLTHWARDRKSGRFSVADAV
CCCCCHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCEEEEEHHHHHCCCCCCHHHHHH
RRLTSVPARVAGLGDRGRIAVGYKADLNVIDHAALRLHKPVISHDLPAGGRRLDQTADGY
HHHHHCCHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCE
VATIVSGEIIAENGVPTAARPGKLVRGRRPGPAPLR
EEEEECCEEEECCCCCCCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Allantoin; H2O [C]

Specific reaction: Allantoin + H2O --> Allantoate + H+ [C]

General reaction: Carboxylic acid amide hydrolysis [C]

Inhibitor: Dithiothreitol; p-Chloromercuribenzene-sulphonic acid [C]

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]