| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is 41409931
Identifier: 41409931
GI number: 41409931
Start: 4287178
End: 4287960
Strand: Reverse
Name: 41409931
Synonym: MAP3833c
Alternate gene names: NA
Gene position: 4287960-4287178 (Counterclockwise)
Preceding gene: 41409933
Following gene: 41409930
Centisome position: 88.78
GC content: 68.33
Gene sequence:
>783_bases GTGCCCGTCGCAGACTTGGTGAAGTCATCAAGCGACGAAGCCAGTTATATTGTACCAGAACGAGATTCGACGCACGAACC GCCGGACGGGTGTGTCGGGCGCCACAGTCGCAGACGTGAGCCGACCCGATACACGGGTCAGGATCGACGGTGTGCGGTGC GCGTCCCGACGCCCCGGTTACCGATCGGCATCAGCGGATTGGCAGGTGCGGTCAGTACCATCGGTGCCGTGGCATCCAAC GGCCCACGCGACGAGTTCCACAACCAGCTCACGCAGCATGCCGACTTCGGCATGAGCCAGCAGCCGCCCACCGGCGAGCT GCCGCCGCCCGGCTTCCCGCCGGACCGGCCCGAGGGGTTCGAGCAACCCGGCAACGTCGACCCGTTCGACCAGCAGGCTG AGCCCACCCCCTGGTATCGCCGGCCCGCGATGCTGATCGCCTGGGTGGTCTCCGTCGTCGTCCTGATCGGCCTGATCGTC TTCGGCGTCATCGAGCTCATCGGCGGCCAACAGGGCGTCAGCCATGTGCCCAAATCGACCACCAGCACGACCACCACGAC CACCACGACCACGACACCGACGACGACAACCACCACCACCACGCCGAGCTCGACCTCGCCCGGCAGCAGCGCCGAACAGC CGCCGGCGCAGCAGCCCAGCCAGCAGCCCGGCGGGGGCCAGACCCAGCAGCCGTCGCATCACCACCGGCTGCCGCAGCTG CCGCCGGTGATCACCATTCCGCAGGTGCCGACCGTCATCACGGTGCCGCCGGGTCTGCGTTAG
Upstream 100 bases:
>100_bases GGCGCTACCGGGAGGCGGTTGTGTAGTGGTCGCGGGCGCGGTCAAGGTGCTCGCATGACCAGCGGTTCCGGTCGGCTCGC TGCGCATTGACGCGGAAAGC
Downstream 100 bases:
>100_bases GCCGCGGGGCGGCGCCCTACACTCGCTGCAATCCAACCGACGACTGACACAGGGGTGCGGGACATGAGCGAGCCGCTCGG ACTGTCGATCGGAGTGGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MPVADLVKSSSDEASYIVPERDSTHEPPDGCVGRHSRRREPTRYTGQDRRCAVRVPTPRLPIGISGLAGAVSTIGAVASN GPRDEFHNQLTQHADFGMSQQPPTGELPPPGFPPDRPEGFEQPGNVDPFDQQAEPTPWYRRPAMLIAWVVSVVVLIGLIV FGVIELIGGQQGVSHVPKSTTSTTTTTTTTTTPTTTTTTTTPSSTSPGSSAEQPPAQQPSQQPGGGQTQQPSHHHRLPQL PPVITIPQVPTVITVPPGLR
Sequences:
>Translated_260_residues MPVADLVKSSSDEASYIVPERDSTHEPPDGCVGRHSRRREPTRYTGQDRRCAVRVPTPRLPIGISGLAGAVSTIGAVASN GPRDEFHNQLTQHADFGMSQQPPTGELPPPGFPPDRPEGFEQPGNVDPFDQQAEPTPWYRRPAMLIAWVVSVVVLIGLIV FGVIELIGGQQGVSHVPKSTTSTTTTTTTTTTPTTTTTTTTPSSTSPGSSAEQPPAQQPSQQPGGGQTQQPSHHHRLPQL PPVITIPQVPTVITVPPGLR >Mature_259_residues PVADLVKSSSDEASYIVPERDSTHEPPDGCVGRHSRRREPTRYTGQDRRCAVRVPTPRLPIGISGLAGAVSTIGAVASNG PRDEFHNQLTQHADFGMSQQPPTGELPPPGFPPDRPEGFEQPGNVDPFDQQAEPTPWYRRPAMLIAWVVSVVVLIGLIVF GVIELIGGQQGVSHVPKSTTSTTTTTTTTTTPTTTTTTTTPSSTSPGSSAEQPPAQQPSQQPGGGQTQQPSHHHRLPQLP PVITIPQVPTVITVPPGLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27680; Mature: 27549
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVADLVKSSSDEASYIVPERDSTHEPPDGCVGRHSRRREPTRYTGQDRRCAVRVPTPRL CCHHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCHHCCCCCCCCCCCCEEEEECCCCCC PIGISGLAGAVSTIGAVASNGPRDEFHNQLTQHADFGMSQQPPTGELPPPGFPPDRPEGF CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC EQPGNVDPFDQQAEPTPWYRRPAMLIAWVVSVVVLIGLIVFGVIELIGGQQGVSHVPKST CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC TSTTTTTTTTTTPTTTTTTTTPSSTSPGSSAEQPPAQQPSQQPGGGQTQQPSHHHRLPQL CCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC PPVITIPQVPTVITVPPGLR CCEEECCCCCEEEECCCCCC >Mature Secondary Structure PVADLVKSSSDEASYIVPERDSTHEPPDGCVGRHSRRREPTRYTGQDRRCAVRVPTPRL CHHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCHHCCCCCCCCCCCCEEEEECCCCCC PIGISGLAGAVSTIGAVASNGPRDEFHNQLTQHADFGMSQQPPTGELPPPGFPPDRPEGF CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC EQPGNVDPFDQQAEPTPWYRRPAMLIAWVVSVVVLIGLIVFGVIELIGGQQGVSHVPKST CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC TSTTTTTTTTTTPTTTTTTTTPSSTSPGSSAEQPPAQQPSQQPGGGQTQQPSHHHRLPQL CCCCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC PPVITIPQVPTVITVPPGLR CCEEECCCCCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA