| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
Click here to switch to the map view.
The map label for this gene is 41408659
Identifier: 41408659
GI number: 41408659
Start: 2878312
End: 2879955
Strand: Direct
Name: 41408659
Synonym: MAP2561
Alternate gene names: NA
Gene position: 2878312-2879955 (Clockwise)
Preceding gene: 41408658
Following gene: 41408660
Centisome position: 59.6
GC content: 71.41
Gene sequence:
>1644_bases ATGAGCGCGACAACCCTGAACCGGCCCTCCGCATCGGCCTCGCCCGCGCCGCTAGGCGGTTCGCACTTCTCCGGCACGCT GCAGATGCTGCGGCTCTACCTGCGCCGGGACCGAATCTCGTTGCCGCTGTGGGTGTTACTGCTGTCGGTGCCGTTGTCCA CGGTCTACGTCGGCAGCATCGAGAAGGTCTACCCCACCGCCGCCGCGCGGGCCGGTTTCGCCGCCTCCATCATGGCCAGC CCGGCCCAGCGCGCCCTGTACGGCCAGGTGTACAGCGACAGCCTTGGGGCCGTGGGGATTTGGAAAGCCGGAATGTTTCA CGTGCTGATCGCCGTCGCGGTGATCCTCACGGTGATCCGGCACACCCGCGCGGACGAGGAAAACGGGCGCACCGAGCTGG TGGACTCCACCGCGATCGGCCGCTACGCCGGCCTGACCGCGGCGCTGACGCTGTCGTTCGCCGCCTCGATCGCCACCGGC GCGATCGGCGCGGCGGGACTGCTGGGCACCGACGTCCCGGCCGGCGGGTCGCTGGCCTTCGGCGCGGCCTTGGCCTGGTC GGGCCTGGTGTTCACCGCGGTGGCCGCGGTCACCGCGCAGCTGTCGCCCAGCGCCCGGTTCGCGCGCGGCGCCGCGTTCG CCGTCCTGGGCACCGCCTTCACCGTGCGTGCCGTCGGCGACGCCGGCCCGGGCGGCCTGTCCTGGCTGTCCCCGCTGGGC TGGTCGCTGCTGGTGAAACCGTATGCGGGCGATCGCTGGTGGGTGCTGGTGCTGCACCTGGTGACCACGGCCGGCCTGAC CGTGCTGGCCTACCGGCTGCTCGCCGGCCGCGACGTCGGCGCCGGGCTGATCGCCGAGCGCCCCGGCCCGGCCACCGCCG CGCCGCGGTTGGGCAACGCCTTCGGGCTGGCGTGGCGGCTGGACCGCGCCGCGCTGCTGTTGTGGACGGCGGGACTGGCC CTGTACGGCCTGCTGATCGGCAGCGTGGTGCACGGCATCGGCGACGAGCTGGGCGACAGCGGACAGGCGCGCGACATCGT CGCGCGGATGGGCGGCACCAGCGCTCTCGAGGACGCGTTCATCGCCGTGGCGTTCGCCATGATGGGCATGGTCGCCGCCA CGTTCGCCGTCTCGCTCACCCTGCGGTTGCACCAGGAGGAATCGAGCCAACGCGCCGAAACGGTGTTGGCCGGTGCGGTG TCGCGAACCCGTTGGCTGGCAAGTCATTTGGTGATCGCGCTGGCCGGGTCCGGGGTGGCGATGCTGGCCAGCGGAACAGT CGCCGGCCTGGTCTACGGCATCGCGGCCGGTGATGTCGGCGGCAAGCTGGCCATGGTGGTGGCCAGCGCGGCCGTCCAGC TGCCCGCGGTCTGGCTGCTGTCGGCGGTGACGGTCTGCGTCTTCGGCGTCGCGCCGCGGTTCGCCCCGGTGGCCTGGGGC GTGCTGATCGGCTTCGTCGCCCTGTATCTGATCGGGTCGCTGGCCGGGTTCTCCCAGTGGCTGCTCCACCTGGAACCGTT CGCCCACATTCCCAGAGTCGGCGCAGATTTCACCGCCGTACCCCTGTTATGGCTACTGGCCATAGACATAGGGTTGACCA TTCTCGGTGCCATGGCTTTTCGGCGCCGCGACCTACGTTGCTAG
Upstream 100 bases:
>100_bases TCAGCCAGCCCCCGACCCTCGAAGAGCTCTTCCTGCGCCACTACGACACCTCCGGGACCGACGGCCAGCGCCGAGCCCAC GAGGCCGAGGTGTCGCTGTC
Downstream 100 bases:
>100_bases GAGAGCGTGATGAAAACCGGACTCCGGGTGACGGCGACGTCCGTCTGGGGAATTCTCTCCTGGATCTTGATCCTGTTGTT GCCGGCCGGCACGCTGCACT
Product: hypothetical protein
Products: NA
Alternate protein names: Exporter Of Polyketide Antibiotics; Anibiotic ABC Transporter Efflux Pump; ABC Transporter Membrane-Spanning Protein; ABC Transporter Membrane Protein; ABC Transporter; Exporter Of Polyketide Antibiotics- Like Protein; ABC Transporter Permease Protein; ABC Antibiotics Transporter; Abc Transporter Integral Membrane Subunit; ABC-2 Type Transport System Permease Protein; Tetronasin Resistance Transmembrane Protein; ABC Transporter Transmembrane Subunit; ABC Transporter Polyketide Tetronasin Permease; Tetronasin-Transport Membrane Protein ABC Transporter; TnrB3 Protein
Number of amino acids: Translated: 547; Mature: 546
Protein sequence:
>547_residues MSATTLNRPSASASPAPLGGSHFSGTLQMLRLYLRRDRISLPLWVLLLSVPLSTVYVGSIEKVYPTAAARAGFAASIMAS PAQRALYGQVYSDSLGAVGIWKAGMFHVLIAVAVILTVIRHTRADEENGRTELVDSTAIGRYAGLTAALTLSFAASIATG AIGAAGLLGTDVPAGGSLAFGAALAWSGLVFTAVAAVTAQLSPSARFARGAAFAVLGTAFTVRAVGDAGPGGLSWLSPLG WSLLVKPYAGDRWWVLVLHLVTTAGLTVLAYRLLAGRDVGAGLIAERPGPATAAPRLGNAFGLAWRLDRAALLLWTAGLA LYGLLIGSVVHGIGDELGDSGQARDIVARMGGTSALEDAFIAVAFAMMGMVAATFAVSLTLRLHQEESSQRAETVLAGAV SRTRWLASHLVIALAGSGVAMLASGTVAGLVYGIAAGDVGGKLAMVVASAAVQLPAVWLLSAVTVCVFGVAPRFAPVAWG VLIGFVALYLIGSLAGFSQWLLHLEPFAHIPRVGADFTAVPLLWLLAIDIGLTILGAMAFRRRDLRC
Sequences:
>Translated_547_residues MSATTLNRPSASASPAPLGGSHFSGTLQMLRLYLRRDRISLPLWVLLLSVPLSTVYVGSIEKVYPTAAARAGFAASIMAS PAQRALYGQVYSDSLGAVGIWKAGMFHVLIAVAVILTVIRHTRADEENGRTELVDSTAIGRYAGLTAALTLSFAASIATG AIGAAGLLGTDVPAGGSLAFGAALAWSGLVFTAVAAVTAQLSPSARFARGAAFAVLGTAFTVRAVGDAGPGGLSWLSPLG WSLLVKPYAGDRWWVLVLHLVTTAGLTVLAYRLLAGRDVGAGLIAERPGPATAAPRLGNAFGLAWRLDRAALLLWTAGLA LYGLLIGSVVHGIGDELGDSGQARDIVARMGGTSALEDAFIAVAFAMMGMVAATFAVSLTLRLHQEESSQRAETVLAGAV SRTRWLASHLVIALAGSGVAMLASGTVAGLVYGIAAGDVGGKLAMVVASAAVQLPAVWLLSAVTVCVFGVAPRFAPVAWG VLIGFVALYLIGSLAGFSQWLLHLEPFAHIPRVGADFTAVPLLWLLAIDIGLTILGAMAFRRRDLRC >Mature_546_residues SATTLNRPSASASPAPLGGSHFSGTLQMLRLYLRRDRISLPLWVLLLSVPLSTVYVGSIEKVYPTAAARAGFAASIMASP AQRALYGQVYSDSLGAVGIWKAGMFHVLIAVAVILTVIRHTRADEENGRTELVDSTAIGRYAGLTAALTLSFAASIATGA IGAAGLLGTDVPAGGSLAFGAALAWSGLVFTAVAAVTAQLSPSARFARGAAFAVLGTAFTVRAVGDAGPGGLSWLSPLGW SLLVKPYAGDRWWVLVLHLVTTAGLTVLAYRLLAGRDVGAGLIAERPGPATAAPRLGNAFGLAWRLDRAALLLWTAGLAL YGLLIGSVVHGIGDELGDSGQARDIVARMGGTSALEDAFIAVAFAMMGMVAATFAVSLTLRLHQEESSQRAETVLAGAVS RTRWLASHLVIALAGSGVAMLASGTVAGLVYGIAAGDVGGKLAMVVASAAVQLPAVWLLSAVTVCVFGVAPRFAPVAWGV LIGFVALYLIGSLAGFSQWLLHLEPFAHIPRVGADFTAVPLLWLLAIDIGLTILGAMAFRRRDLRC
Specific function: Unknown
COG id: COG3559
COG function: function code M; Putative exporter of polyketide antibiotics
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56371; Mature: 56239
Theoretical pI: Translated: 10.07; Mature: 10.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSATTLNRPSASASPAPLGGSHFSGTLQMLRLYLRRDRISLPLWVLLLSVPLSTVYVGSI CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCH EKVYPTAAARAGFAASIMASPAQRALYGQVYSDSLGAVGIWKAGMFHVLIAVAVILTVIR HHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH HTRADEENGRTELVDSTAIGRYAGLTAALTLSFAASIATGAIGAAGLLGTDVPAGGSLAF HHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHH GAALAWSGLVFTAVAAVTAQLSPSARFARGAAFAVLGTAFTVRAVGDAGPGGLSWLSPLG HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHCC WSLLVKPYAGDRWWVLVLHLVTTAGLTVLAYRLLAGRDVGAGLIAERPGPATAAPRLGNA CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH FGLAWRLDRAALLLWTAGLALYGLLIGSVVHGIGDELGDSGQARDIVARMGGTSALEDAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHH IAVAFAMMGMVAATFAVSLTLRLHQEESSQRAETVLAGAVSRTRWLASHLVIALAGSGVA HHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE MLASGTVAGLVYGIAAGDVGGKLAMVVASAAVQLPAVWLLSAVTVCVFGVAPRFAPVAWG EHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VLIGFVALYLIGSLAGFSQWLLHLEPFAHIPRVGADFTAVPLLWLLAIDIGLTILGAMAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RRRDLRC HHHCCCC >Mature Secondary Structure SATTLNRPSASASPAPLGGSHFSGTLQMLRLYLRRDRISLPLWVLLLSVPLSTVYVGSI CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCH EKVYPTAAARAGFAASIMASPAQRALYGQVYSDSLGAVGIWKAGMFHVLIAVAVILTVIR HHHHHHHHHHCCHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH HTRADEENGRTELVDSTAIGRYAGLTAALTLSFAASIATGAIGAAGLLGTDVPAGGSLAF HHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHH GAALAWSGLVFTAVAAVTAQLSPSARFARGAAFAVLGTAFTVRAVGDAGPGGLSWLSPLG HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHCC WSLLVKPYAGDRWWVLVLHLVTTAGLTVLAYRLLAGRDVGAGLIAERPGPATAAPRLGNA CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCH FGLAWRLDRAALLLWTAGLALYGLLIGSVVHGIGDELGDSGQARDIVARMGGTSALEDAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHH IAVAFAMMGMVAATFAVSLTLRLHQEESSQRAETVLAGAVSRTRWLASHLVIALAGSGVA HHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE MLASGTVAGLVYGIAAGDVGGKLAMVVASAAVQLPAVWLLSAVTVCVFGVAPRFAPVAWG EHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VLIGFVALYLIGSLAGFSQWLLHLEPFAHIPRVGADFTAVPLLWLLAIDIGLTILGAMAF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RRRDLRC HHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA