Click here to switch to the map view.

The map label for this gene is 41408492

Identifier: 41408492

GI number: 41408492

Start: 2690092

End: 2690898

Strand: Direct

Name: 41408492

Synonym: MAP2394

Alternate gene names: NA

Gene position: 2690092-2690898 (Clockwise)

Preceding gene: 41408489

Following gene: 41408495

Centisome position: 55.7

GC content: 64.31

Gene sequence:

>807_bases
TTGATGGAGGTGCCCGTAGTGGCAAAACAGGCAACCGCCGACAAGCGCCAACGACGCGAGCGCGGGTCCATCAATCCCGA
TGACATCATCACCGGCGCTTTCGAACTCGCGGAGCAGGTGTCGATCGACAACCTGAGCATGCCGCTGCTGGGCAAACATC
TCGGTGTCGGTGTGACGAGCATCTACTGGTACTTCCGCAAGAAGGACGACCTGCTCAACGCGATGACCGACCGCGCGCTG
AGCAAGTACGTGTTCGCCACTCCCTACGTCGAAGCCAGCGACTGGCGCGAGACGTTGCGAAATCACGCCCGTTTGATGCG
TAAGACCTTCATGGGCAACCCCATTCTGTGCGACCTGATTCTGATTCGGGCGGCGCTGAGCCCCAAGGCGGCGCGGCTGG
GGGCCCAGGAGATGGAAAAGGCGGTGGCCAATCTGGTGCAGGCCGGCCTGTCACCGGAGGACGCGTTCGACACCTACTCG
GCGATCTCCGTTCACGTGCGCGGTTCGGTGGTGCTGCAACGGCTCTACGAAAAGAACCAGTCGTCCGACGTCGGGCCGCG
CGCCATCGAGGACGCCGTTGCCATCGATCCGGAAAAGACCCCGCTGCTGGCTCAAGTGACCCGGATCGGTCATCGCATCG
GGGCGCCCGACGAAACCAATTTCGAGTACGGGCTGACCTGCATCCTCGACCACGCCAGCCGGCTGATCGAGGAGGGTAAG
GGCGCTAAGGCCGGGCCCTCGCGACAGCGCAAGCCCGCCAAGTCGTCGGCCGCGCGGGGCCGCACCAAGGCGCCGGCGAA
TCGCTGA

Upstream 100 bases:

>100_bases
AATTGCGACACGTAAGCGTATACGCAGGTCAGAACCGAGGAGCCGGTAAATTCGAGTTTACCGGCTGCGCCGCCGCCGGA
CCGCATGCACGGAACAGATT

Downstream 100 bases:

>100_bases
CCGTTCCCGAAAAGGCTTGTCACGCCTCCGGTTCCGGCACGTGGAAGTGCTCGTCGCGAAGCCGGAACGCTTCCTTGGCG
CCGTGCTCGGCGCGGGACTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MMEVPVVAKQATADKRQRRERGSINPDDIITGAFELAEQVSIDNLSMPLLGKHLGVGVTSIYWYFRKKDDLLNAMTDRAL
SKYVFATPYVEASDWRETLRNHARLMRKTFMGNPILCDLILIRAALSPKAARLGAQEMEKAVANLVQAGLSPEDAFDTYS
AISVHVRGSVVLQRLYEKNQSSDVGPRAIEDAVAIDPEKTPLLAQVTRIGHRIGAPDETNFEYGLTCILDHASRLIEEGK
GAKAGPSRQRKPAKSSAARGRTKAPANR

Sequences:

>Translated_268_residues
MMEVPVVAKQATADKRQRRERGSINPDDIITGAFELAEQVSIDNLSMPLLGKHLGVGVTSIYWYFRKKDDLLNAMTDRAL
SKYVFATPYVEASDWRETLRNHARLMRKTFMGNPILCDLILIRAALSPKAARLGAQEMEKAVANLVQAGLSPEDAFDTYS
AISVHVRGSVVLQRLYEKNQSSDVGPRAIEDAVAIDPEKTPLLAQVTRIGHRIGAPDETNFEYGLTCILDHASRLIEEGK
GAKAGPSRQRKPAKSSAARGRTKAPANR
>Mature_268_residues
MMEVPVVAKQATADKRQRRERGSINPDDIITGAFELAEQVSIDNLSMPLLGKHLGVGVTSIYWYFRKKDDLLNAMTDRAL
SKYVFATPYVEASDWRETLRNHARLMRKTFMGNPILCDLILIRAALSPKAARLGAQEMEKAVANLVQAGLSPEDAFDTYS
AISVHVRGSVVLQRLYEKNQSSDVGPRAIEDAVAIDPEKTPLLAQVTRIGHRIGAPDETNFEYGLTCILDHASRLIEEGK
GAKAGPSRQRKPAKSSAARGRTKAPANR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR004111
- InterPro:   IPR001647 [H]

Pfam domain/function: PF02909 TetR_C; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 29525; Mature: 29525

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEVPVVAKQATADKRQRRERGSINPDDIITGAFELAEQVSIDNLSMPLLGKHLGVGVTS
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHH
IYWYFRKKDDLLNAMTDRALSKYVFATPYVEASDWRETLRNHARLMRKTFMGNPILCDLI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LIRAALSPKAARLGAQEMEKAVANLVQAGLSPEDAFDTYSAISVHVRGSVVLQRLYEKNQ
HHHHHCCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEHHHHHHHHHHHHHCC
SSDVGPRAIEDAVAIDPEKTPLLAQVTRIGHRIGAPDETNFEYGLTCILDHASRLIEEGK
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC
GAKAGPSRQRKPAKSSAARGRTKAPANR
CCCCCCCCCCCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MMEVPVVAKQATADKRQRRERGSINPDDIITGAFELAEQVSIDNLSMPLLGKHLGVGVTS
CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHH
IYWYFRKKDDLLNAMTDRALSKYVFATPYVEASDWRETLRNHARLMRKTFMGNPILCDLI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
LIRAALSPKAARLGAQEMEKAVANLVQAGLSPEDAFDTYSAISVHVRGSVVLQRLYEKNQ
HHHHHCCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEHHHHHHHHHHHHHCC
SSDVGPRAIEDAVAIDPEKTPLLAQVTRIGHRIGAPDETNFEYGLTCILDHASRLIEEGK
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC
GAKAGPSRQRKPAKSSAARGRTKAPANR
CCCCCCCCCCCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]