Click here to switch to the map view.

The map label for this gene is eccD5 [H]

Identifier: 41407608

GI number: 41407608

Start: 1657210

End: 1658721

Strand: Direct

Name: eccD5 [H]

Synonym: MAP1510

Alternate gene names: 41407608

Gene position: 1657210-1658721 (Clockwise)

Preceding gene: 41407607

Following gene: 41407609

Centisome position: 34.31

GC content: 70.97

Gene sequence:

>1512_bases
ATGACTGCGGTTGTTGAAGTACCACAGCCTGACGTAGAGGGCATCTCGCAGCCCCAGGCGGTCGTCGTCGGCGTGATGGC
CGGCGCGGGTGTGCAGATCGGCGTACTGCTGGACGCCAACGCCCCGGTCTCGGTGATGACCGAGCCGCTGCTCAAGGTGG
TCAACAGTCGGCTGCGTGAGCTCGGCGAGACCCCGCTGGAGGCCACGGGCCGGGTCCGCTGGGCGCTGTGCCTGGTGGAC
GGCTCGCCGCTGCGGGCCACCCAGTCGCTCAGCGAGCAGGACGTCTACGACGGCGACCGGCTGTGGATCCGGTTCATCCC
GGACACCGAACACCGCTCACAGGTCATCGAGCACATCTCCACCGCCGTCGCGGCCAACCTCAGCAAGCGCTTCGCCGCCA
TCGACCCAGTGGTCGCCGTGCAGGTCGGTGCCACCATGGTGGCCGTCGGCGTCACCGCCGCGTCCGGCCTGCTCGGCTGG
TGGCGCTGGCACCACAACTCCTGGTTGCCGACCGTCTACGCCGGCGTGATCGGCGTGCTGATGCTGGGCGTGTCGGTGCT
GCTGCTCATGCGCGCCACCACCCAGCAGGAGCGGCGGGTGGGCGACACCCTGCTGCTGAGCAGCCTGGCGCCGGTGTCGG
TCGCCGCTGCGGCCGCGCCACCCGGGGGCGTGGGCTCGCCCCAGGCCGTACTGGGCTTCGGCGTGCTGACCATCGCCGCG
GTGCTCGCGTTGCGGTTCACCGGGCGTCGGCTGGCGATCTACACCGCGATCGTCACCGTCAGCGCGATCGCGGCGCTGGC
CGCCCTGGCCCGCATGGTCGCGATGACCGGCGCGGTGACGCTGTTGACCTGCGTGGTGCTGGTGTCGGTGCTGATCTACC
AGAGCGCGCCGGCGATCTCGCGGCGGCTGGCCGGCATCCGGCTGCCCGTCTTCCCGTCGGCCACCAGCCGCTGGGTGTTC
GAGGCCCGGCCCGACCTGCCCACCACCGTGGTGCGGTCCGACGGCGGCCCGCCGGTGCTGGAGGGTCCCGCCTCGGTGCG
CGACGTGCTGACCCAGGCCGAGCGTGCCCGTTCCTTCCTGTCGGGTCTGCTGATCGGGCTCGGCGTGCTGATGGTCGTCT
CGCTGACCGCGCTGTCGGACCCGCGCACCGGGCAACGCTGGTTGCCGGTGCTGCTGGCCGGTTTCTGCGCGGGCTTCCTG
CTGCTGCGCGGCCGCTCCTACGTCGACCGCTGGCAGGCCATCACCCTGGCCGGGACGGCGGTGCTGATCGTCGGCGCGGT
GGTGGTGCGCTACGCGCTGGTGCTGCAGTCGCCGCTCGCGGTCTCGATCAGCGCCGCGATCCTGGTGCTGGTGCCGGTGG
CGGGCCTGACGTCGGCGGCCGTGGTGCCGAACACCGTCTACAGCCCGCTGTTCCGCAAGTTCGTGGAATGGATCGAATAC
CTCTGCCTGATGCCGATCTTCCCGCTGGCATTGTGGTTGATGAATGTCTATGCAGCGATCCGCTACCGCTGA

Upstream 100 bases:

>100_bases
ACTGTGCGGGGGTCCGCGACGCCTCGAGGAGGCCGGAACCGGCCCGCGCCCGATTGGCGGCGCGGGCCCACACATTCATC
ACGGTAGGGAGTGCAAGGCG

Downstream 100 bases:

>100_bases
GGCCAACGTGTGGCGCGGCCGCGCGTCCGCCGCGGCCCTGGCCGCCCTGTTGCTCGCGTCGGGCGCGCTGGCCGGACTGC
CGCCGGCCGCCGCGATTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: ESX conserved component D5; Type VII secretion system protein eccD5; T7SS protein eccD5 [H]

Number of amino acids: Translated: 503; Mature: 502

Protein sequence:

>503_residues
MTAVVEVPQPDVEGISQPQAVVVGVMAGAGVQIGVLLDANAPVSVMTEPLLKVVNSRLRELGETPLEATGRVRWALCLVD
GSPLRATQSLSEQDVYDGDRLWIRFIPDTEHRSQVIEHISTAVAANLSKRFAAIDPVVAVQVGATMVAVGVTAASGLLGW
WRWHHNSWLPTVYAGVIGVLMLGVSVLLLMRATTQQERRVGDTLLLSSLAPVSVAAAAAPPGGVGSPQAVLGFGVLTIAA
VLALRFTGRRLAIYTAIVTVSAIAALAALARMVAMTGAVTLLTCVVLVSVLIYQSAPAISRRLAGIRLPVFPSATSRWVF
EARPDLPTTVVRSDGGPPVLEGPASVRDVLTQAERARSFLSGLLIGLGVLMVVSLTALSDPRTGQRWLPVLLAGFCAGFL
LLRGRSYVDRWQAITLAGTAVLIVGAVVVRYALVLQSPLAVSISAAILVLVPVAGLTSAAVVPNTVYSPLFRKFVEWIEY
LCLMPIFPLALWLMNVYAAIRYR

Sequences:

>Translated_503_residues
MTAVVEVPQPDVEGISQPQAVVVGVMAGAGVQIGVLLDANAPVSVMTEPLLKVVNSRLRELGETPLEATGRVRWALCLVD
GSPLRATQSLSEQDVYDGDRLWIRFIPDTEHRSQVIEHISTAVAANLSKRFAAIDPVVAVQVGATMVAVGVTAASGLLGW
WRWHHNSWLPTVYAGVIGVLMLGVSVLLLMRATTQQERRVGDTLLLSSLAPVSVAAAAAPPGGVGSPQAVLGFGVLTIAA
VLALRFTGRRLAIYTAIVTVSAIAALAALARMVAMTGAVTLLTCVVLVSVLIYQSAPAISRRLAGIRLPVFPSATSRWVF
EARPDLPTTVVRSDGGPPVLEGPASVRDVLTQAERARSFLSGLLIGLGVLMVVSLTALSDPRTGQRWLPVLLAGFCAGFL
LLRGRSYVDRWQAITLAGTAVLIVGAVVVRYALVLQSPLAVSISAAILVLVPVAGLTSAAVVPNTVYSPLFRKFVEWIEY
LCLMPIFPLALWLMNVYAAIRYR
>Mature_502_residues
TAVVEVPQPDVEGISQPQAVVVGVMAGAGVQIGVLLDANAPVSVMTEPLLKVVNSRLRELGETPLEATGRVRWALCLVDG
SPLRATQSLSEQDVYDGDRLWIRFIPDTEHRSQVIEHISTAVAANLSKRFAAIDPVVAVQVGATMVAVGVTAASGLLGWW
RWHHNSWLPTVYAGVIGVLMLGVSVLLLMRATTQQERRVGDTLLLSSLAPVSVAAAAAPPGGVGSPQAVLGFGVLTIAAV
LALRFTGRRLAIYTAIVTVSAIAALAALARMVAMTGAVTLLTCVVLVSVLIYQSAPAISRRLAGIRLPVFPSATSRWVFE
ARPDLPTTVVRSDGGPPVLEGPASVRDVLTQAERARSFLSGLLIGLGVLMVVSLTALSDPRTGQRWLPVLLAGFCAGFLL
LRGRSYVDRWQAITLAGTAVLIVGAVVVRYALVLQSPLAVSISAAILVLVPVAGLTSAAVVPNTVYSPLFRKFVEWIEYL
CLMPIFPLALWLMNVYAAIRYR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eccD/snm4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006707 [H]

Pfam domain/function: PF04600 DUF571 [H]

EC number: NA

Molecular weight: Translated: 53304; Mature: 53172

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAVVEVPQPDVEGISQPQAVVVGVMAGAGVQIGVLLDANAPVSVMTEPLLKVVNSRLRE
CCEEEECCCCCCCCCCCCHHEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
LGETPLEATGRVRWALCLVDGSPLRATQSLSEQDVYDGDRLWIRFIPDTEHRSQVIEHIS
HCCCCCCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
TAVAANLSKRFAAIDPVVAVQVGATMVAVGVTAASGLLGWWRWHHNSWLPTVYAGVIGVL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
MLGVSVLLLMRATTQQERRVGDTLLLSSLAPVSVAAAAAPPGGVGSPQAVLGFGVLTIAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
VLALRFTGRRLAIYTAIVTVSAIAALAALARMVAMTGAVTLLTCVVLVSVLIYQSAPAIS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RRLAGIRLPVFPSATSRWVFEARPDLPTTVVRSDGGPPVLEGPASVRDVLTQAERARSFL
HHHCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
SGLLIGLGVLMVVSLTALSDPRTGQRWLPVLLAGFCAGFLLLRGRSYVDRWQAITLAGTA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
VLIVGAVVVRYALVLQSPLAVSISAAILVLVPVAGLTSAAVVPNTVYSPLFRKFVEWIEY
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHH
LCLMPIFPLALWLMNVYAAIRYR
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TAVVEVPQPDVEGISQPQAVVVGVMAGAGVQIGVLLDANAPVSVMTEPLLKVVNSRLRE
CEEEECCCCCCCCCCCCHHEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHH
LGETPLEATGRVRWALCLVDGSPLRATQSLSEQDVYDGDRLWIRFIPDTEHRSQVIEHIS
HCCCCCCCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHH
TAVAANLSKRFAAIDPVVAVQVGATMVAVGVTAASGLLGWWRWHHNSWLPTVYAGVIGVL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
MLGVSVLLLMRATTQQERRVGDTLLLSSLAPVSVAAAAAPPGGVGSPQAVLGFGVLTIAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
VLALRFTGRRLAIYTAIVTVSAIAALAALARMVAMTGAVTLLTCVVLVSVLIYQSAPAIS
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
RRLAGIRLPVFPSATSRWVFEARPDLPTTVVRSDGGPPVLEGPASVRDVLTQAERARSFL
HHHCCCCCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
SGLLIGLGVLMVVSLTALSDPRTGQRWLPVLLAGFCAGFLLLRGRSYVDRWQAITLAGTA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
VLIVGAVVVRYALVLQSPLAVSISAAILVLVPVAGLTSAAVVPNTVYSPLFRKFVEWIEY
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHH
LCLMPIFPLALWLMNVYAAIRYR
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]