| Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
|---|---|
| Accession | NC_002944 |
| Length | 4,829,781 |
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The map label for this gene is ydjK [H]
Identifier: 41407521
GI number: 41407521
Start: 1555376
End: 1556776
Strand: Direct
Name: ydjK [H]
Synonym: MAP1423
Alternate gene names: 41407521
Gene position: 1555376-1556776 (Clockwise)
Preceding gene: 41407520
Following gene: 41407525
Centisome position: 32.2
GC content: 68.81
Gene sequence:
>1401_bases GTGATCGGCCTGGGCGGGGTGTGGGTGCTCGACGGGCTCGAGGTCACCATGGTGGGCAACGTCTCGGCGCGGCTGATGGA GCCGGGCAGCGGCATCGCGCTCAACCCGGCACAGATCGGCATGGCGGCCGCGATCTACATCGCCGGAGCGTGTTCCGGTG CGCTGTTCTTCGGTCACCTGACCGACCGGTTCGGGCGGCGGAACCTGTTCATCCTCACCCTGGCCCTCTACCTGATCGCC ACCGTGGCGACCGCGTTCGCGTTCGCCCCCTGGTATTTCTTCCTGACCCGGTTCTTCACCGGCGCCGGCATCGGCGGTGA ATACGCCGCCATCAACTCGGCCATCGACGAGCTGATCCCGGCGCGGGTGCGCGGCCGCGTCGACCTGGTGATCAACGGAA CCTATTGGCTGGGTTCGGCGGCCGGCGCCGGCGGCGCCCTGATCCTGCTGGACACCTCGAACTTCGCGGCCGACCTCGGC TGGCGCCTGGCCTTCGGCATCGGCGCCATCCTCGGCATCTTCGTGCTGCTGGTCCGACGCAACGTCCCGGAAAGCCCGCG CTGGCTGTTCATCCACGGCCGCGAGGAGGAAGCCGAGCACATCGTCGGCGAGATCGAGGAGGCGGTCCAGCAGCAGACCG GCCGACCCCTGCCCGAGCCGCAGGGCAAGGCGCTGCGCATCCGTCAGCGCACCGCGATCTCGTTCCGGGAGATCGCCGCG GTGGCCTTCAAGCTCTACCCGCGGCGCGCGGTGCTCGGCCTGGCGTTGTTCATCGGGCAGGCGTTCCTCTACAACGGCGT CACGTTCAACCTCGGCACCCTGCTCAGCCAGTTCTACGCGGTGCCCTCCGGCATGGTGCCGGTGTTCTTCGTGCTGTGGG CGTTGAGCAACTTCGCCGGGCCGCTGCTGCTGGGGCACCTGTTCGACACGGTGGGCCGCAAACAGATGATCACGCTGACC TACATCGGTTCCGCCGTCGTCGTGGTGGCGCTGGCGCTGGTGTTCCTCACCCAGGCCGGCGGGGTGTGGGCCTTCATCGG CGTGCTGATCGTGGCGTTCTTCCTGGCCTCGGCGGGCGCCAGCGCGGCGTACCTGACGGTCGGCGAGATCTTCCCGATGG AGACCCGGGCGCTGGCTATCGCGTTCTTCTACGCGATGGGCACGGCGATCGGCGGTATCACCGGCCCGCTGCTGTTCGGT CAGCTGATCGACTCGGGCCAGCGCGACCATGTGGTGTGGTCGTTTTTGATCGGGGCGGTGGTGATGGCGGCGGCCGGGCT GGTCGAGCTGTGGCTCGGCATCGCCGCCGAGCAACGCCCGCTGGAGGACCTGGCCCTGCCGTTGACGGTGGACGACGCCG AAGACACTGAGCCCCAAGGGGATTCAGCGCCCGTCGACTGA
Upstream 100 bases:
>100_bases GGGCTGACGCATGAGCGCCGGCGCGCAGACCAACACCATCACCACACACGTGCCGGCGCGGCTGGACCGGCTGCCGTGGT CGCGGTTCCACTGGCGGGTG
Downstream 100 bases:
>100_bases TCAGCCGGTGAGTTTGGTCAGCCAGCTGGGGTCCTGATAGTTCACCGCCACAGGCGATACGGCCCGAATTGCGAGCCCTC CCGCGAATCCGCGCTCGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 466; Mature: 466
Protein sequence:
>466_residues MIGLGGVWVLDGLEVTMVGNVSARLMEPGSGIALNPAQIGMAAAIYIAGACSGALFFGHLTDRFGRRNLFILTLALYLIA TVATAFAFAPWYFFLTRFFTGAGIGGEYAAINSAIDELIPARVRGRVDLVINGTYWLGSAAGAGGALILLDTSNFAADLG WRLAFGIGAILGIFVLLVRRNVPESPRWLFIHGREEEAEHIVGEIEEAVQQQTGRPLPEPQGKALRIRQRTAISFREIAA VAFKLYPRRAVLGLALFIGQAFLYNGVTFNLGTLLSQFYAVPSGMVPVFFVLWALSNFAGPLLLGHLFDTVGRKQMITLT YIGSAVVVVALALVFLTQAGGVWAFIGVLIVAFFLASAGASAAYLTVGEIFPMETRALAIAFFYAMGTAIGGITGPLLFG QLIDSGQRDHVVWSFLIGAVVMAAAGLVELWLGIAAEQRPLEDLALPLTVDDAEDTEPQGDSAPVD
Sequences:
>Translated_466_residues MIGLGGVWVLDGLEVTMVGNVSARLMEPGSGIALNPAQIGMAAAIYIAGACSGALFFGHLTDRFGRRNLFILTLALYLIA TVATAFAFAPWYFFLTRFFTGAGIGGEYAAINSAIDELIPARVRGRVDLVINGTYWLGSAAGAGGALILLDTSNFAADLG WRLAFGIGAILGIFVLLVRRNVPESPRWLFIHGREEEAEHIVGEIEEAVQQQTGRPLPEPQGKALRIRQRTAISFREIAA VAFKLYPRRAVLGLALFIGQAFLYNGVTFNLGTLLSQFYAVPSGMVPVFFVLWALSNFAGPLLLGHLFDTVGRKQMITLT YIGSAVVVVALALVFLTQAGGVWAFIGVLIVAFFLASAGASAAYLTVGEIFPMETRALAIAFFYAMGTAIGGITGPLLFG QLIDSGQRDHVVWSFLIGAVVMAAAGLVELWLGIAAEQRPLEDLALPLTVDDAEDTEPQGDSAPVD >Mature_466_residues MIGLGGVWVLDGLEVTMVGNVSARLMEPGSGIALNPAQIGMAAAIYIAGACSGALFFGHLTDRFGRRNLFILTLALYLIA TVATAFAFAPWYFFLTRFFTGAGIGGEYAAINSAIDELIPARVRGRVDLVINGTYWLGSAAGAGGALILLDTSNFAADLG WRLAFGIGAILGIFVLLVRRNVPESPRWLFIHGREEEAEHIVGEIEEAVQQQTGRPLPEPQGKALRIRQRTAISFREIAA VAFKLYPRRAVLGLALFIGQAFLYNGVTFNLGTLLSQFYAVPSGMVPVFFVLWALSNFAGPLLLGHLFDTVGRKQMITLT YIGSAVVVVALALVFLTQAGGVWAFIGVLIVAFFLASAGASAAYLTVGEIFPMETRALAIAFFYAMGTAIGGITGPLLFG QLIDSGQRDHVVWSFLIGAVVMAAAGLVELWLGIAAEQRPLEDLALPLTVDDAEDTEPQGDSAPVD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI166197673, Length=420, Percent_Identity=24.5238095238095, Blast_Score=73, Evalue=6e-13, Organism=Homo sapiens, GI63999576, Length=403, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=8e-12, Organism=Homo sapiens, GI4506999, Length=413, Percent_Identity=25.181598062954, Blast_Score=66, Evalue=6e-11, Organism=Escherichia coli, GI1788074, Length=377, Percent_Identity=30.5039787798408, Blast_Score=112, Evalue=6e-26, Organism=Escherichia coli, GI1786229, Length=380, Percent_Identity=26.5789473684211, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1790550, Length=426, Percent_Identity=26.5258215962441, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1790463, Length=372, Percent_Identity=23.6559139784946, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI87082159, Length=192, Percent_Identity=28.125, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI87082404, Length=397, Percent_Identity=21.6624685138539, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI87082231, Length=444, Percent_Identity=23.8738738738739, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1788068, Length=455, Percent_Identity=23.7362637362637, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI87081723, Length=378, Percent_Identity=26.4550264550265, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17565978, Length=298, Percent_Identity=23.8255033557047, Blast_Score=70, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323653, Length=379, Percent_Identity=25.065963060686, Blast_Score=86, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6320766, Length=372, Percent_Identity=22.5806451612903, Blast_Score=75, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6324400, Length=372, Percent_Identity=22.5806451612903, Blast_Score=74, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6321888, Length=367, Percent_Identity=21.7983651226158, Blast_Score=73, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6321100, Length=372, Percent_Identity=25.5376344086022, Blast_Score=73, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6320745, Length=369, Percent_Identity=24.390243902439, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322618, Length=370, Percent_Identity=21.6216216216216, Blast_Score=72, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6319956, Length=370, Percent_Identity=21.6216216216216, Blast_Score=70, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6321886, Length=369, Percent_Identity=21.9512195121951, Blast_Score=70, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6322242, Length=383, Percent_Identity=21.4099216710183, Blast_Score=70, Evalue=5e-13, Organism=Saccharomyces cerevisiae, GI6324417, Length=370, Percent_Identity=21.0810810810811, Blast_Score=70, Evalue=9e-13, Organism=Saccharomyces cerevisiae, GI6323110, Length=381, Percent_Identity=20.4724409448819, Blast_Score=68, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6320552, Length=373, Percent_Identity=22.7882037533512, Blast_Score=68, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322247, Length=383, Percent_Identity=22.1932114882507, Blast_Score=66, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6319718, Length=315, Percent_Identity=23.1746031746032, Blast_Score=64, Evalue=4e-11, Organism=Drosophila melanogaster, GI221330907, Length=369, Percent_Identity=25.4742547425474, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI19922616, Length=362, Percent_Identity=24.585635359116, Blast_Score=73, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 49649; Mature: 49649
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIGLGGVWVLDGLEVTMVGNVSARLMEPGSGIALNPAQIGMAAAIYIAGACSGALFFGHL CCCCCCEEEECCEEEEEEECCCEEEECCCCCCEECHHHHHHHHHHHHHHHHCHHHHHHHH TDRFGRRNLFILTLALYLIATVATAFAFAPWYFFLTRFFTGAGIGGEYAAINSAIDELIP HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH ARVRGRVDLVINGTYWLGSAAGAGGALILLDTSNFAADLGWRLAFGIGAILGIFVLLVRR HHHCCCEEEEEECCEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHC NVPESPRWLFIHGREEEAEHIVGEIEEAVQQQTGRPLPEPQGKALRIRQRTAISFREIAA CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHH VAFKLYPRRAVLGLALFIGQAFLYNGVTFNLGTLLSQFYAVPSGMVPVFFVLWALSNFAG HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH PLLLGHLFDTVGRKQMITLTYIGSAVVVVALALVFLTQAGGVWAFIGVLIVAFFLASAGA HHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC SAAYLTVGEIFPMETRALAIAFFYAMGTAIGGITGPLLFGQLIDSGQRDHVVWSFLIGAV CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH VMAAAGLVELWLGIAAEQRPLEDLALPLTVDDAEDTEPQGDSAPVD HHHHHHHHHHHHHHHCCCCCHHHCCCEEEECCCCCCCCCCCCCCCC >Mature Secondary Structure MIGLGGVWVLDGLEVTMVGNVSARLMEPGSGIALNPAQIGMAAAIYIAGACSGALFFGHL CCCCCCEEEECCEEEEEEECCCEEEECCCCCCEECHHHHHHHHHHHHHHHHCHHHHHHHH TDRFGRRNLFILTLALYLIATVATAFAFAPWYFFLTRFFTGAGIGGEYAAINSAIDELIP HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH ARVRGRVDLVINGTYWLGSAAGAGGALILLDTSNFAADLGWRLAFGIGAILGIFVLLVRR HHHCCCEEEEEECCEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHC NVPESPRWLFIHGREEEAEHIVGEIEEAVQQQTGRPLPEPQGKALRIRQRTAISFREIAA CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHH VAFKLYPRRAVLGLALFIGQAFLYNGVTFNLGTLLSQFYAVPSGMVPVFFVLWALSNFAG HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH PLLLGHLFDTVGRKQMITLTYIGSAVVVVALALVFLTQAGGVWAFIGVLIVAFFLASAGA HHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC SAAYLTVGEIFPMETRALAIAFFYAMGTAIGGITGPLLFGQLIDSGQRDHVVWSFLIGAV CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHH VMAAAGLVELWLGIAAEQRPLEDLALPLTVDDAEDTEPQGDSAPVD HHHHHHHHHHHHHHHCCCCCHHHCCCEEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]