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The map label for this gene is tlyA

Identifier: 41407499

GI number: 41407499

Start: 1513093

End: 1513902

Strand: Direct

Name: tlyA

Synonym: MAP1401

Alternate gene names: 41407499

Gene position: 1513093-1513902 (Clockwise)

Preceding gene: 41407498

Following gene: 41407500

Centisome position: 31.33

GC content: 74.81

Gene sequence:

>810_bases
ATGTCTCGACGCGCCCGCGTTGACGCCGAGCTGGTCCGGCGCGGCCTGGCCCGGTCGCGCCAGCAGGCCGCGGAGCTGAT
CGGCGCCGGCAAGGTGAGCATCGACGGGATGCCGGCCCGCAAACCGGGCACCGCCGTCGCCGTCACCGCCGCCCTGACCG
TCGCCGCGGACGGCGAACGCGGCTGGGTGTCCCGCGGGGCGCACAAACTGCTGGGCGCCCTGGACGCCTTCGAGATCGCG
GTGGCGGGCCGCCGCTGCCTGGACGCCGGCGCGTCGACGGGTGGGTTCACCGAGGTGCTGCTGGACCGCGGGGCGGCCGA
GGTGGTCGCGGTGGACGTGGGCTACGGCCAGCTGGCCTGGTCGCTGCGCAGCGATGCGCGGGTGGTCGTGGTGGAACGGA
CCAACGTGCGCGACCTGACACCGGAGGCGATCGGCGGGCCGGCCGACCTGGTGGTGGCGGACCTGTCGTTCATCTCGCTG
TGCACGGTGTTGCCGGCGCTGGCTGGCTGCGCCGCGCCGCACGCGGATATCGTTCCCATGGTGAAGCCGCAGTTTGAGGT
GGGGAAGGGCCAGGTTGGGCCCGGGGGTGTGGTGAACGACCCCGAATTGCGCGCGCAGGCCGTGCTGTCGGTCGCCCGGC
GCGCCGACGAGCTGGGCTGGCACCCCGTCGACGTCACCGCCAGCCCGCTGCCCGGACCGTCGGGAAACGTCGAATACTTC
CTGCGGCTGCGCGCCCGCACCGACCGCCCGCTGGCCGGCGACGCGCTGTGCCGCGCGGTGCGGCGCGCGGTGGAAAGCGG
ACCGCAGTGA

Upstream 100 bases:

>100_bases
CCTCGCTCGACGAACTCGAAGAGATCGCACGCCGGCTCTCCGAGGCGCACGACGTGCTGCTGGCCGCGCTGGAGTCGGCG
GAGAAGGGCTGAGTGCGCGG

Downstream 100 bases:

>100_bases
CCCCCGCCGAGCGCACCGTCCTGATGGTGGTCCACACCGGCCGCGAAGAAGCAACCGAGACGGCACGCCGAGTACAGAAG
GTGCTGGGCGACAACGGGAT

Product: TlyA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSRRARVDAELVRRGLARSRQQAAELIGAGKVSIDGMPARKPGTAVAVTAALTVAADGERGWVSRGAHKLLGALDAFEIA
VAGRRCLDAGASTGGFTEVLLDRGAAEVVAVDVGYGQLAWSLRSDARVVVVERTNVRDLTPEAIGGPADLVVADLSFISL
CTVLPALAGCAAPHADIVPMVKPQFEVGKGQVGPGGVVNDPELRAQAVLSVARRADELGWHPVDVTASPLPGPSGNVEYF
LRLRARTDRPLAGDALCRAVRRAVESGPQ

Sequences:

>Translated_269_residues
MSRRARVDAELVRRGLARSRQQAAELIGAGKVSIDGMPARKPGTAVAVTAALTVAADGERGWVSRGAHKLLGALDAFEIA
VAGRRCLDAGASTGGFTEVLLDRGAAEVVAVDVGYGQLAWSLRSDARVVVVERTNVRDLTPEAIGGPADLVVADLSFISL
CTVLPALAGCAAPHADIVPMVKPQFEVGKGQVGPGGVVNDPELRAQAVLSVARRADELGWHPVDVTASPLPGPSGNVEYF
LRLRARTDRPLAGDALCRAVRRAVESGPQ
>Mature_268_residues
SRRARVDAELVRRGLARSRQQAAELIGAGKVSIDGMPARKPGTAVAVTAALTVAADGERGWVSRGAHKLLGALDAFEIAV
AGRRCLDAGASTGGFTEVLLDRGAAEVVAVDVGYGQLAWSLRSDARVVVVERTNVRDLTPEAIGGPADLVVADLSFISLC
TVLPALAGCAAPHADIVPMVKPQFEVGKGQVGPGGVVNDPELRAQAVLSVARRADELGWHPVDVTASPLPGPSGNVEYFL
RLRARTDRPLAGDALCRAVRRAVESGPQ

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27988; Mature: 27857

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRRARVDAELVRRGLARSRQQAAELIGAGKVSIDGMPARKPGTAVAVTAALTVAADGER
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEEEECCCC
GWVSRGAHKLLGALDAFEIAVAGRRCLDAGASTGGFTEVLLDRGAAEVVAVDVGYGQLAW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCHHEE
SLRSDARVVVVERTNVRDLTPEAIGGPADLVVADLSFISLCTVLPALAGCAAPHADIVPM
EECCCCEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
VKPQFEVGKGQVGPGGVVNDPELRAQAVLSVARRADELGWHPVDVTASPLPGPSGNVEYF
CCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
LRLRARTDRPLAGDALCRAVRRAVESGPQ
EEEECCCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRRARVDAELVRRGLARSRQQAAELIGAGKVSIDGMPARKPGTAVAVTAALTVAADGER
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEEEECCCC
GWVSRGAHKLLGALDAFEIAVAGRRCLDAGASTGGFTEVLLDRGAAEVVAVDVGYGQLAW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEEECCCCHHEE
SLRSDARVVVVERTNVRDLTPEAIGGPADLVVADLSFISLCTVLPALAGCAAPHADIVPM
EECCCCEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
VKPQFEVGKGQVGPGGVVNDPELRAQAVLSVARRADELGWHPVDVTASPLPGPSGNVEYF
CCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
LRLRARTDRPLAGDALCRAVRRAVESGPQ
EEEECCCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]