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The map label for this gene is yciR [C]

Identifier: 41407047

GI number: 41407047

Start: 980016

End: 981869

Strand: Direct

Name: yciR [C]

Synonym: MAP0949

Alternate gene names: 41407047

Gene position: 980016-981869 (Clockwise)

Preceding gene: 41407046

Following gene: 41407049

Centisome position: 20.29

GC content: 70.44

Gene sequence:

>1854_bases
GTGCCACGCAGCCTGGACCTGGTGGTCACCTCCGTCGCCACCGCGCTGATGGAGGCCACGGCGTCCACGGCACGCTCGGT
CAGCGAAACGGTGCTCGCGCAGCTCGTCGAGCAGTTCGATGTGGACGCCAGCTTCCTGCACCACCACGACGCCGCGGGCC
CGGTGCCGGTGGCCGAGTGGCCGCGGCGAACCGATGCCGCGGGCCCGATGGCCGCGCTGCGATCCGAGGACGTCGAATCG
GTGCTGGCCCAATGCGAGCGGCAGCGCCGGCCGGTGGTGAGCAGCCCGGACCGGGTCGACGGTTGGCTGCGCCGCTGGCT
GCAGCGCGACAAGGCAGCCGGCGCGCCCTCGGTGGCCGCCGCACCGCTGGTGTCCGGCGACGCCACCACCGGTGTGCTCG
GCTTCGTCAAGTTCGGCGCCCGCAGGTGGAAGCCGGAGGAGATCAACACCCTCGAGGCGGTCGCTGCGCTGTTCGCGCAG
CTGCAGGCCCGCATCGCCGCCGAGGAACGGCTTCGCTACCTCGCCGAGCACGACGACCTGACCGGTGTGTACAACCGGCG
GGCGCTGGTTGCGCATCTGACCGAACGGCTGGCGGCCGGAAACCCCGGGCCGGTGGCGGTGTTCTATCTCGACCTGGACC
GGTTGAAGCCGATCAACGACTACCTCGGCCACACCGCGGGAGACTGGTTCATCCGGGTGTTCGCGCAGCGCATCGAGGAA
TGCGCGGGCGAGCAGAGCATGATCGCCCGGCTGGGCGGCGACGAGTTCGTGGTCATCCCGCACCAGCCGATGGCGTCCGA
GGCCGCCGAGGCGTTCGCCCGCCGGCTGTCGACGCTGCTGTGCGACCGGCTGACCATCGGTGGGCACGTGATCAGCCGGA
CCGTCAGCATCGGGCTGGCGGTGGGCACACCCGGGGCGGACAACTGCACCGACCTGCTGCGGCGGGCCGACGAGGCGGTG
CTGACCGCCAAGCGCGCCGGCGGCAACCAGACCGCGGTGTCCACCGATGACATGTCGCTGAAGCGGGCCTTCCGCAACGA
CATCGAGCTGCACCTGCAGGGCGACATCGAAAGCGAGGGCCTGCTGCTGCACTACCTGCCCGAGGTCGACCTGTGGACCG
GCGCCGTCGTGGGGGCCGAGGCGCTGGTGCGCTGGCGGCACCCGATCTGGGGGCTGCTGCTGCCGGACTCGTTCATCGGG
GTCGCCGAATCGACCAACCTGGGCGCCGAGCTGGGCGGGGGGGTGATGCGCAGCGCCTGCGCCGATTTCAGCCGGTGGCG
GGCCAACGGCGTGGGCCACGGCGCGATGTTGCGCATCAACGTCTCGCCCATCCAGCTGATCAGCCGGGGCTTCGTGGAAA
CCGTCGCCGACACGATCGGCGAGTTCGGCATCGACGCGGGCTCGGTGTGCCTGGAGATCACCGAGCGCGCGGTGGTGCAC
GACACCGAGACCACCCGAAAGACGTTGTCGGAGCTCAAGGAAGTCGGTGTGCAGATCGCCATCGACGACTTCGGCACCGG
CTACGCCGTGCTGTCCCACCTGAAGTCGCTTCCCGTCGACATGCTCAAGATCGACGCCGGGTTCGTCCGGGAGGTGGGCA
CCGACGCCGGGGACCTGGCGATCGTGCGGGCCATCATCGGGCTGGCCGAGGCGTTCGGCCTGGAAGTGGTCGCCGAGGGC
GTCGAAACACCTGCTGCCGCACTGACTTTGATGCAGCACGGCTGTCACCGGGCGCAGGGTTTTCTGCTGTCGCGCCCGAT
CCCCGGCGAGGCGATGGAAGCGCTGCTGTCCGCGCGCTGGATGCCGATGCCGTTTCTCGCCGACCGCGAGGCGTCGTCGA
TGGGCTCGATCTAG

Upstream 100 bases:

>100_bases
GATCGCCGGGCCGGTGCGTGATACCGTTTCCGCACGTATTTCGGCCCCGTGACGTGGGGTCGGCACCCAGACGGAATGTG
CGCCCGTATCGGAGGACTCC

Downstream 100 bases:

>100_bases
CCCCTCGACCCGCTCAGCGTTCGTCCGGCAGGAAGACGAAGTTGTTCACGTACGGGCCCCGGCCGGTCCAGCCGTCCTGC
CGGCTGCCGGCGTTGGCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 617; Mature: 616

Protein sequence:

>617_residues
MPRSLDLVVTSVATALMEATASTARSVSETVLAQLVEQFDVDASFLHHHDAAGPVPVAEWPRRTDAAGPMAALRSEDVES
VLAQCERQRRPVVSSPDRVDGWLRRWLQRDKAAGAPSVAAAPLVSGDATTGVLGFVKFGARRWKPEEINTLEAVAALFAQ
LQARIAAEERLRYLAEHDDLTGVYNRRALVAHLTERLAAGNPGPVAVFYLDLDRLKPINDYLGHTAGDWFIRVFAQRIEE
CAGEQSMIARLGGDEFVVIPHQPMASEAAEAFARRLSTLLCDRLTIGGHVISRTVSIGLAVGTPGADNCTDLLRRADEAV
LTAKRAGGNQTAVSTDDMSLKRAFRNDIELHLQGDIESEGLLLHYLPEVDLWTGAVVGAEALVRWRHPIWGLLLPDSFIG
VAESTNLGAELGGGVMRSACADFSRWRANGVGHGAMLRINVSPIQLISRGFVETVADTIGEFGIDAGSVCLEITERAVVH
DTETTRKTLSELKEVGVQIAIDDFGTGYAVLSHLKSLPVDMLKIDAGFVREVGTDAGDLAIVRAIIGLAEAFGLEVVAEG
VETPAAALTLMQHGCHRAQGFLLSRPIPGEAMEALLSARWMPMPFLADREASSMGSI

Sequences:

>Translated_617_residues
MPRSLDLVVTSVATALMEATASTARSVSETVLAQLVEQFDVDASFLHHHDAAGPVPVAEWPRRTDAAGPMAALRSEDVES
VLAQCERQRRPVVSSPDRVDGWLRRWLQRDKAAGAPSVAAAPLVSGDATTGVLGFVKFGARRWKPEEINTLEAVAALFAQ
LQARIAAEERLRYLAEHDDLTGVYNRRALVAHLTERLAAGNPGPVAVFYLDLDRLKPINDYLGHTAGDWFIRVFAQRIEE
CAGEQSMIARLGGDEFVVIPHQPMASEAAEAFARRLSTLLCDRLTIGGHVISRTVSIGLAVGTPGADNCTDLLRRADEAV
LTAKRAGGNQTAVSTDDMSLKRAFRNDIELHLQGDIESEGLLLHYLPEVDLWTGAVVGAEALVRWRHPIWGLLLPDSFIG
VAESTNLGAELGGGVMRSACADFSRWRANGVGHGAMLRINVSPIQLISRGFVETVADTIGEFGIDAGSVCLEITERAVVH
DTETTRKTLSELKEVGVQIAIDDFGTGYAVLSHLKSLPVDMLKIDAGFVREVGTDAGDLAIVRAIIGLAEAFGLEVVAEG
VETPAAALTLMQHGCHRAQGFLLSRPIPGEAMEALLSARWMPMPFLADREASSMGSI
>Mature_616_residues
PRSLDLVVTSVATALMEATASTARSVSETVLAQLVEQFDVDASFLHHHDAAGPVPVAEWPRRTDAAGPMAALRSEDVESV
LAQCERQRRPVVSSPDRVDGWLRRWLQRDKAAGAPSVAAAPLVSGDATTGVLGFVKFGARRWKPEEINTLEAVAALFAQL
QARIAAEERLRYLAEHDDLTGVYNRRALVAHLTERLAAGNPGPVAVFYLDLDRLKPINDYLGHTAGDWFIRVFAQRIEEC
AGEQSMIARLGGDEFVVIPHQPMASEAAEAFARRLSTLLCDRLTIGGHVISRTVSIGLAVGTPGADNCTDLLRRADEAVL
TAKRAGGNQTAVSTDDMSLKRAFRNDIELHLQGDIESEGLLLHYLPEVDLWTGAVVGAEALVRWRHPIWGLLLPDSFIGV
AESTNLGAELGGGVMRSACADFSRWRANGVGHGAMLRINVSPIQLISRGFVETVADTIGEFGIDAGSVCLEITERAVVHD
TETTRKTLSELKEVGVQIAIDDFGTGYAVLSHLKSLPVDMLKIDAGFVREVGTDAGDLAIVRAIIGLAEAFGLEVVAEGV
ETPAAALTLMQHGCHRAQGFLLSRPIPGEAMEALLSARWMPMPFLADREASSMGSI

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=435, Percent_Identity=34.2528735632184, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI87081921, Length=453, Percent_Identity=30.242825607064, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI226510982, Length=410, Percent_Identity=29.0243902439024, Blast_Score=165, Evalue=8e-42,
Organism=Escherichia coli, GI1787055, Length=433, Percent_Identity=28.8683602771363, Blast_Score=152, Evalue=8e-38,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=38.5892116182573, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1788502, Length=254, Percent_Identity=36.2204724409449, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI1786507, Length=220, Percent_Identity=36.8181818181818, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=30, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87082096, Length=200, Percent_Identity=35, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI87081845, Length=223, Percent_Identity=33.6322869955157, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87081980, Length=252, Percent_Identity=33.3333333333333, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=31.2252964426877, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=34.1040462427746, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787262, Length=234, Percent_Identity=28.2051282051282, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=32.5443786982249, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI145693134, Length=185, Percent_Identity=30.8108108108108, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788381, Length=424, Percent_Identity=23.8207547169811, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=32.6923076923077, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=33.5260115606936, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=32.3170731707317, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081974, Length=84, Percent_Identity=41.6666666666667, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787410, Length=224, Percent_Identity=25.8928571428571, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=27.8787878787879, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 66387; Mature: 66256

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRSLDLVVTSVATALMEATASTARSVSETVLAQLVEQFDVDASFLHHHDAAGPVPVAEW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCC
PRRTDAAGPMAALRSEDVESVLAQCERQRRPVVSSPDRVDGWLRRWLQRDKAAGAPSVAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
APLVSGDATTGVLGFVKFGARRWKPEEINTLEAVAALFAQLQARIAAEERLRYLAEHDDL
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TGVYNRRALVAHLTERLAAGNPGPVAVFYLDLDRLKPINDYLGHTAGDWFIRVFAQRIEE
CHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCHHHHHCCCHHHHHHHHHHHHHHH
CAGEQSMIARLGGDEFVVIPHQPMASEAAEAFARRLSTLLCDRLTIGGHVISRTVSIGLA
HCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEEEE
VGTPGADNCTDLLRRADEAVLTAKRAGGNQTAVSTDDMSLKRAFRNDIELHLQGDIESEG
ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHCCCEEEEECCCCCCC
LLLHYLPEVDLWTGAVVGAEALVRWRHPIWGLLLPDSFIGVAESTNLGAELGGGVMRSAC
EEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCHHHCCCCCCCCCHHHCCHHHHHHH
ADFSRWRANGVGHGAMLRINVSPIQLISRGFVETVADTIGEFGIDAGSVCLEITERAVVH
HHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
DTETTRKTLSELKEVGVQIAIDDFGTGYAVLSHLKSLPVDMLKIDAGFVREVGTDAGDLA
CCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCHHHHHHCHHHHHHHCCCCHHHH
IVRAIIGLAEAFGLEVVAEGVETPAAALTLMQHGCHRAQGFLLSRPIPGEAMEALLSARW
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCCC
MPMPFLADREASSMGSI
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRSLDLVVTSVATALMEATASTARSVSETVLAQLVEQFDVDASFLHHHDAAGPVPVAEW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCC
PRRTDAAGPMAALRSEDVESVLAQCERQRRPVVSSPDRVDGWLRRWLQRDKAAGAPSVAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHH
APLVSGDATTGVLGFVKFGARRWKPEEINTLEAVAALFAQLQARIAAEERLRYLAEHDDL
CCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TGVYNRRALVAHLTERLAAGNPGPVAVFYLDLDRLKPINDYLGHTAGDWFIRVFAQRIEE
CHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCHHHHHCCCHHHHHHHHHHHHHHH
CAGEQSMIARLGGDEFVVIPHQPMASEAAEAFARRLSTLLCDRLTIGGHVISRTVSIGLA
HCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEEEE
VGTPGADNCTDLLRRADEAVLTAKRAGGNQTAVSTDDMSLKRAFRNDIELHLQGDIESEG
ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHCCCEEEEECCCCCCC
LLLHYLPEVDLWTGAVVGAEALVRWRHPIWGLLLPDSFIGVAESTNLGAELGGGVMRSAC
EEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCHHHCCCCCCCCCHHHCCHHHHHHH
ADFSRWRANGVGHGAMLRINVSPIQLISRGFVETVADTIGEFGIDAGSVCLEITERAVVH
HHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
DTETTRKTLSELKEVGVQIAIDDFGTGYAVLSHLKSLPVDMLKIDAGFVREVGTDAGDLA
CCHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCCHHHHHHCHHHHHHHCCCCHHHH
IVRAIIGLAEAFGLEVVAEGVETPAAALTLMQHGCHRAQGFLLSRPIPGEAMEALLSARW
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHCCC
MPMPFLADREASSMGSI
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]