Definition | Mycobacterium avium subsp. paratuberculosis K-10, complete genome. |
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Accession | NC_002944 |
Length | 4,829,781 |
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The map label for this gene is 41407002
Identifier: 41407002
GI number: 41407002
Start: 933505
End: 934245
Strand: Direct
Name: 41407002
Synonym: MAP0904
Alternate gene names: NA
Gene position: 933505-934245 (Clockwise)
Preceding gene: 41407001
Following gene: 41407003
Centisome position: 19.33
GC content: 65.18
Gene sequence:
>741_bases ATGCCGGTGATGGGGGTCACAAACGCGTCGATTCTCAGTACGATGCGTTCGGGGGAGGACCCGACGGCCCCTGCGAGTTT CCTCCTTTCCTTTCGGGCGGTCGCGGATCGACCTACCTTCCCTTTTCGATACACGGACGGCTGGTCCCGTCCATTTTCGA GAGGAATTGAAATGCGCGAGATTACGAAACGAACGGCTGCTTTCTCCGTTGCGCTTGCGGCCTTCGCGCTGATCGGTGGG GCGTGCAGCAAGTCGAACAACGCCGGGCAGACAACCAGCTCGGCGAGTTCGTCGGCGACCTCCTCGGCGACCTCGGGAAC CTCGGCGAGCGCGGCGCCGTCGGAAAGCACGGGCACCAGCGGCGCCCCGAGTTCGACGCAGATCAACGGCGCCAACGGCA CCCCGTACACCGTCGAGGGGCCGATCCTGGCCAAGTACAACGCCCTCGACGACAAGGCGCGCAAGGACTTGGGCGCCCCG ACGGGCAACGAGCAGAAGAACCCGGACGGCGGCGTCTACCAGCAATTCGACGGCGGCGTGATCGTTTCCAAGACGCAGGC TTACGTGGTGTGGGGCAAGATCCGCGACAAGTGGAACCAGCTGGGCGGGTCGCAGGGCCAGTTGGGTTACCCGACCAGCG ACGAGGTGGACACCCCCGACGGCGCGAAGAAGTCGACGTTCGAGCACGGCACCATCACCTGGAAGCCGGGTGACGCCGAG GCCACCGTCACCACCGGTTAG
Upstream 100 bases:
>100_bases GTCGGTGCGCGACGACGAGGTGACCGCGGCCGCCGCCAACGCCGGCATCACGCTGTATCTCACCGGGGCGCGTCACTTCG CCCACTAGCGATTGGCCGCG
Downstream 100 bases:
>100_bases GTACGCCGCGAAGGCCGGGCGTCCCCACGATGCCCGGCCTTCGTGTCGGCACGCAGTGAACGCCCTTCGGATGACGCGTC TGGGCGCTCGTCGTAGCGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MPVMGVTNASILSTMRSGEDPTAPASFLLSFRAVADRPTFPFRYTDGWSRPFSRGIEMREITKRTAAFSVALAAFALIGG ACSKSNNAGQTTSSASSSATSSATSGTSASAAPSESTGTSGAPSSTQINGANGTPYTVEGPILAKYNALDDKARKDLGAP TGNEQKNPDGGVYQQFDGGVIVSKTQAYVVWGKIRDKWNQLGGSQGQLGYPTSDEVDTPDGAKKSTFEHGTITWKPGDAE ATVTTG
Sequences:
>Translated_246_residues MPVMGVTNASILSTMRSGEDPTAPASFLLSFRAVADRPTFPFRYTDGWSRPFSRGIEMREITKRTAAFSVALAAFALIGG ACSKSNNAGQTTSSASSSATSSATSGTSASAAPSESTGTSGAPSSTQINGANGTPYTVEGPILAKYNALDDKARKDLGAP TGNEQKNPDGGVYQQFDGGVIVSKTQAYVVWGKIRDKWNQLGGSQGQLGYPTSDEVDTPDGAKKSTFEHGTITWKPGDAE ATVTTG >Mature_245_residues PVMGVTNASILSTMRSGEDPTAPASFLLSFRAVADRPTFPFRYTDGWSRPFSRGIEMREITKRTAAFSVALAAFALIGGA CSKSNNAGQTTSSASSSATSSATSGTSASAAPSESTGTSGAPSSTQINGANGTPYTVEGPILAKYNALDDKARKDLGAPT GNEQKNPDGGVYQQFDGGVIVSKTQAYVVWGKIRDKWNQLGGSQGQLGYPTSDEVDTPDGAKKSTFEHGTITWKPGDAEA TVTTG
Specific function: Unknown
COG id: COG5479
COG function: function code M; Uncharacterized protein potentially involved in peptidoglycan biosynthesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25480; Mature: 25349
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVMGVTNASILSTMRSGEDPTAPASFLLSFRAVADRPTFPFRYTDGWSRPFSRGIEMRE CCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCHHHH ITKRTAAFSVALAAFALIGGACSKSNNAGQTTSSASSSATSSATSGTSASAAPSESTGTS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GAPSSTQINGANGTPYTVEGPILAKYNALDDKARKDLGAPTGNEQKNPDGGVYQQFDGGV CCCCCCEEECCCCCCEEECCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCEEECCCCE IVSKTQAYVVWGKIRDKWNQLGGSQGQLGYPTSDEVDTPDGAKKSTFEHGTITWKPGDAE EEECCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC ATVTTG EEEECC >Mature Secondary Structure PVMGVTNASILSTMRSGEDPTAPASFLLSFRAVADRPTFPFRYTDGWSRPFSRGIEMRE CCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCHHHH ITKRTAAFSVALAAFALIGGACSKSNNAGQTTSSASSSATSSATSGTSASAAPSESTGTS HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GAPSSTQINGANGTPYTVEGPILAKYNALDDKARKDLGAPTGNEQKNPDGGVYQQFDGGV CCCCCCEEECCCCCCEEECCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCEEECCCCE IVSKTQAYVVWGKIRDKWNQLGGSQGQLGYPTSDEVDTPDGAKKSTFEHGTITWKPGDAE EEECCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC ATVTTG EEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA