Click here to switch to the map view.

The map label for this gene is cspB

Identifier: 41406908

GI number: 41406908

Start: 827955

End: 828371

Strand: Direct

Name: cspB

Synonym: MAP0810

Alternate gene names: 41406908

Gene position: 827955-828371 (Clockwise)

Preceding gene: 41406906

Following gene: 41406909

Centisome position: 17.14

GC content: 69.06

Gene sequence:

>417_bases
GTGAGACCAGTGCCGACCGGCAAGGTTAAGTGGTACGACGCTGACAAGGGCTTCGGCTTCCTGTCCCAGGAGGACGGCGA
AGACGTGTACGTCCGCTCGTCGGCGTTGCCCGCTGGCGTCGAGGGGCTCAAAGCGGGCCAGCGCGTGGAATTCGGCATCG
CCTCCGGCCGCCGCGGACCGCAAGCGTTGAGCCTCAAGCTGATTGAGCCGCCGCCGAGCCTGACCAAGGCGCGGCGCGAG
GGGCCTGCCGAACACAAGCACAGCCCCGACGAGCTGCACGGCATGGTCGAGGACATGATCACGCTGCTGGAAAGCACCGT
CCAACCCGAGCTGCGCAAGGGCCGCTACCCCGACCGCAAGACCGCGCGCCGGGTCTCCGAGGTGGTCAGGGCGGTGGCCC
GCGAGCTGGACGCCTGA

Upstream 100 bases:

>100_bases
CGAGGCGCGCACCCGAGTAGGATCAGACTCTTAATACGGCGTCCTGCGCAGGCGGGACGCTTATTGTGTTGCCTATTTCA
TTGATTCGTCAGACAAGCAG

Downstream 100 bases:

>100_bases
CACACCGTTTGTCAGCGCCTGTTTGCAGTTGACCGTGGTGGCGGGCCGCACAGGGGGTACTCACACCCCATTGACGGCCG
GCGAGCAGGGAGGCTGCGAT

Product: CspB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MRPVPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGPQALSLKLIEPPPSLTKARRE
GPAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTARRVSEVVRAVARELDA

Sequences:

>Translated_138_residues
MRPVPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGPQALSLKLIEPPPSLTKARRE
GPAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTARRVSEVVRAVARELDA
>Mature_138_residues
MRPVPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGPQALSLKLIEPPPSLTKARRE
GPAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRKTARRVSEVVRAVARELDA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=49.1803278688525, Blast_Score=61, Evalue=3e-11,
Organism=Escherichia coli, GI1789979, Length=59, Percent_Identity=52.5423728813559, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 15232; Mature: 15232

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPVPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGP
CCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCEEEEECCCCCCCC
QALSLKLIEPPPSLTKARREGPAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRK
CEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHH
TARRVSEVVRAVARELDA
HHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRPVPTGKVKWYDADKGFGFLSQEDGEDVYVRSSALPAGVEGLKAGQRVEFGIASGRRGP
CCCCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCEEEEECCCCCCCC
QALSLKLIEPPPSLTKARREGPAEHKHSPDELHGMVEDMITLLESTVQPELRKGRYPDRK
CEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHH
TARRVSEVVRAVARELDA
HHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]