| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is 39997990
Identifier: 39997990
GI number: 39997990
Start: 3191201
End: 3194140
Strand: Reverse
Name: 39997990
Synonym: GSU2899
Alternate gene names: NA
Gene position: 3194140-3191201 (Counterclockwise)
Preceding gene: 39997992
Following gene: 39997989
Centisome position: 83.74
GC content: 66.02
Gene sequence:
>2940_bases ATGATTAATGTGTATATGAAATGGCACAGGGGCTGTGCACTGGCCGGTGCGGCAGTCCTGTCGGCGCTGGCATGTGCGGC TGCGCTCTTCGCGCTCGCCGGTACGGCCGCAGCCGGCACCATTACCGACTGTTCCGGCTGCCACGGCATGCCGCCGGTTG ATGCCCCCTATCGCAACATCTCCACCGGCCGGTTCATGGGAAGCCACGACACCCATGCCTGGCTTAGCGCCGGAACCCCC AACTGCGCCATCTGCCACAAGATGCCCGCCACCTACAACCACCGCAACAACAACGTGGACTTTGTGACCACTATCAATAA CTCGCGGCTCACGGCCCGTTACAGGAACCTTACGTCCTTCACCCGCACGGCGAGCCCGAGCTTCGGCACCTGCTCCAACG TCAACTGCCACTTCGAGAAGACGACCCCCCAGAACGGGGCCACGCCGCTCTACCTGGACGGCGGCAAGACGATCCAGCAG AAATGCGCCACCTGCCACAGCGCCCCTCCGGCGGACGCTCGCCACGCAAAGCATGCCCAGTACTACGGGGATGTGACCAC GGCCTGCGTCAAGTGTCACCCCGACCATGCGGCCAAGCCGGGCAAGGGGGCGTTCTCCCATGCCACGAGCGCCGGCCGGC GGGGGCTGGTGATCCAGTTCACGGCATTTCCCAACACCGGCGGCTCCTTCAGCGGCGATGTGAGCTATCCCCTCTATCTC TACAACCCGTCCCGCACCGGCGCGTGCACCAACCTCTACTGCCACAGCCCCGGCACCAAGGCCGGCAGCTACGACCCTCC CAATCAGTCGCCCGACTGGGCAGGCACGCTCGGCACCAGTTGTCTCGGCTGTCACCGGGGGGATGCCGACTCCGGCTCTC CCATGCAGACCGGGTCCCACGGGGCGCACGTGGGGGTGAATGCCGCGGCGCAGATCGGTTGTGTCCAGTGCCATGGCGCA ACAGTGACGAATTCCCGCCAGATCGGCGATCCGACGCAGCACGTGAACAAGAAGGCCGATATCTCCTTCGAGGCCGCCAT CGGCAGCGCCGGAACCTACGGCGGCGCCGCCGGGCATGTGGCCAAGGACGTGGGCACCGCCTACGGCACCTGCCGGAATA TCTACTGCCACTCCGACGGCGCCACCACCACGCCGCCGTTCAACGACTACGCCGTGACCTGGGGGGCGGCCGACTTCCCG ACAGGCTGCACCGGCTGCCATGGCGGTCAGCAGGGGAGCGGCAACGTCATTGCGTCAAACAACCACCGCAAACACGTGGA TGCAAGCTACAACGGCGGGCTCGGCACGGGTATCGGCTGCGTGGAGTGCCACGCCCCTACCGTTTCCGGGAACCTGACCA TTGCCGATAAGGCCAGGCACGTAAACCGCTTCAAGGATTACTCCGGACAGCGGGCCGGCACGATCGCCGCCGGCACCTGC TCGAATGTCTACTGCCACAGCTCGGGCCAGCGCTCCCCGGCATACCGGACCATGGTGCCCTGGAGCGATACGGCGACCAC CTACGGCTGCTCGTCCTGTCACGGCGCGTCCACCGCCGGCCCGGCCGGGGTCTTTGTCAGCCGGTTCGGCGAGCCCAACT ACAACAACTACAGCTCTGCCGACCGTAACTGGTTCAACTCCCACAACCCGAAACACGTCAGGTCGGCCGGCGACTGCAGC ACCTGCCACGCCGGCACCACCCAGAACGGCGTCTCCCTGGTGCCCGGCACGACCCTGCACGCCAACACCCAGAAGAACGT CACCTTCAACACCGCGGTCGCGGGCGGCAACAGCCCGTCCTACAACGACCTCAGCCGCCGCTGCACCAACGTCTACTGCC ACTCCAACGGCCGGCAGACCGGCAGGGCCTACGCGACCCCCCGCTGGGGCGGTTCCGCCCAGAACTGCAACGCCTGCCAC CCCATCGCCGGGTTGGGAGGCGCCCATGGCATCCACGTGGGAGGGATGATCCCGACCTTCTATGCCTATACCGGCAACCA CCCGGTGGGAGCGGCCTATCGCTACGGCTGCGCCAACTGCCATCCGATGGATCCGGTGCACCACATCGACGGCCACATCG ACCTCTCCCTCAGCAAGAACGATGTGAATGCCGGCGGGCTGAAAACGAAAAACGGCGCGACCAACGGCAGCGGACTCAAT TCAGCCGGCAGCGGCCTGACCGGCACCACCGGCGCGTCGGTCAGGTGCGCGTCGGTCTACTGCCACAGCAACGGCTACGC CGCAAACCTGGTCTACGCCGCCACGCCCGACTGGTACGGCGGCAGCTTTGCCGGCGACCGCTGCGCCGCCTGTCACGGCA ACTCGCCCAACAGCACCATTGCCGGGTCCTCGTCCCACTACAACAACCGTTTCCTCGGCTACACCGGCGTGGCAGGCGGC CACCAGATCGGCATCCACGCCATGAACATCTACAGCAGCCCGGGCAAGCGCGCCACGGCCGGCACCACCGGCAGCAGCAG CCATGGCAATGCAGCCACCGCCACCACCATCAGCTGCAACATCTGCCACTACGAGACCGTCACCACCGCCCGCAACGACG ACAACGCGGTCTGCAAGACCTGCCATTACGACGGCAACGCCGTCGGTGCCCTGTCGGGCAATCGGGCTGCGATCGCGGAC CGGTCGAAGCACGTCAACGGCCTCGTGGATGTGGCGTTCAAACCCGTGGCCGTCATCTCCAAAGCCCAGATGCGGCCGGC AAGCTTCGCCATCGCCACCTACAGCAGCGTCTGGAAGCGCAACGGCGGCTACAAGGTCTCCGGTGCCAACGATTCAGCCA AGCAGGCGCTCGACACGGCCACCATGTGGGACGGCGGCACCAAGACCTGCTCCAACATCGCCTGCCACAACGGCCAGAGC GTGAAGTGGACCGACAACAACGGCATTACCGAGTGCGTCAGTTGCCATTCGGCCATGTAG
Upstream 100 bases:
>100_bases TTATGCTTGCTGGTCGGTGATAAGGCGACAGCGGGCCGTTAAGGGGCTGCAAGAATTGTCAGTTGTCGGGTACTCCTGCG GAAAGAGGCGGAGGGTCGTC
Downstream 100 bases:
>100_bases CCATGCAATAGACTTTCCGCCATCTACGCCACACGAGGGATTTTATGGAAACAGCGCTCGTCAGGAAAATCAGGGGAATG GGGATACGGACTAAAATCGG
Product: high-molecular-weight cytochrome C
Products: NA
Alternate protein names: High-Molecular-Weight Cytochrome C; Cytochrome C; Multihaem Cytochrome
Number of amino acids: Translated: 979; Mature: 979
Protein sequence:
>979_residues MINVYMKWHRGCALAGAAVLSALACAAALFALAGTAAAGTITDCSGCHGMPPVDAPYRNISTGRFMGSHDTHAWLSAGTP NCAICHKMPATYNHRNNNVDFVTTINNSRLTARYRNLTSFTRTASPSFGTCSNVNCHFEKTTPQNGATPLYLDGGKTIQQ KCATCHSAPPADARHAKHAQYYGDVTTACVKCHPDHAAKPGKGAFSHATSAGRRGLVIQFTAFPNTGGSFSGDVSYPLYL YNPSRTGACTNLYCHSPGTKAGSYDPPNQSPDWAGTLGTSCLGCHRGDADSGSPMQTGSHGAHVGVNAAAQIGCVQCHGA TVTNSRQIGDPTQHVNKKADISFEAAIGSAGTYGGAAGHVAKDVGTAYGTCRNIYCHSDGATTTPPFNDYAVTWGAADFP TGCTGCHGGQQGSGNVIASNNHRKHVDASYNGGLGTGIGCVECHAPTVSGNLTIADKARHVNRFKDYSGQRAGTIAAGTC SNVYCHSSGQRSPAYRTMVPWSDTATTYGCSSCHGASTAGPAGVFVSRFGEPNYNNYSSADRNWFNSHNPKHVRSAGDCS TCHAGTTQNGVSLVPGTTLHANTQKNVTFNTAVAGGNSPSYNDLSRRCTNVYCHSNGRQTGRAYATPRWGGSAQNCNACH PIAGLGGAHGIHVGGMIPTFYAYTGNHPVGAAYRYGCANCHPMDPVHHIDGHIDLSLSKNDVNAGGLKTKNGATNGSGLN SAGSGLTGTTGASVRCASVYCHSNGYAANLVYAATPDWYGGSFAGDRCAACHGNSPNSTIAGSSSHYNNRFLGYTGVAGG HQIGIHAMNIYSSPGKRATAGTTGSSSHGNAATATTISCNICHYETVTTARNDDNAVCKTCHYDGNAVGALSGNRAAIAD RSKHVNGLVDVAFKPVAVISKAQMRPASFAIATYSSVWKRNGGYKVSGANDSAKQALDTATMWDGGTKTCSNIACHNGQS VKWTDNNGITECVSCHSAM
Sequences:
>Translated_979_residues MINVYMKWHRGCALAGAAVLSALACAAALFALAGTAAAGTITDCSGCHGMPPVDAPYRNISTGRFMGSHDTHAWLSAGTP NCAICHKMPATYNHRNNNVDFVTTINNSRLTARYRNLTSFTRTASPSFGTCSNVNCHFEKTTPQNGATPLYLDGGKTIQQ KCATCHSAPPADARHAKHAQYYGDVTTACVKCHPDHAAKPGKGAFSHATSAGRRGLVIQFTAFPNTGGSFSGDVSYPLYL YNPSRTGACTNLYCHSPGTKAGSYDPPNQSPDWAGTLGTSCLGCHRGDADSGSPMQTGSHGAHVGVNAAAQIGCVQCHGA TVTNSRQIGDPTQHVNKKADISFEAAIGSAGTYGGAAGHVAKDVGTAYGTCRNIYCHSDGATTTPPFNDYAVTWGAADFP TGCTGCHGGQQGSGNVIASNNHRKHVDASYNGGLGTGIGCVECHAPTVSGNLTIADKARHVNRFKDYSGQRAGTIAAGTC SNVYCHSSGQRSPAYRTMVPWSDTATTYGCSSCHGASTAGPAGVFVSRFGEPNYNNYSSADRNWFNSHNPKHVRSAGDCS TCHAGTTQNGVSLVPGTTLHANTQKNVTFNTAVAGGNSPSYNDLSRRCTNVYCHSNGRQTGRAYATPRWGGSAQNCNACH PIAGLGGAHGIHVGGMIPTFYAYTGNHPVGAAYRYGCANCHPMDPVHHIDGHIDLSLSKNDVNAGGLKTKNGATNGSGLN SAGSGLTGTTGASVRCASVYCHSNGYAANLVYAATPDWYGGSFAGDRCAACHGNSPNSTIAGSSSHYNNRFLGYTGVAGG HQIGIHAMNIYSSPGKRATAGTTGSSSHGNAATATTISCNICHYETVTTARNDDNAVCKTCHYDGNAVGALSGNRAAIAD RSKHVNGLVDVAFKPVAVISKAQMRPASFAIATYSSVWKRNGGYKVSGANDSAKQALDTATMWDGGTKTCSNIACHNGQS VKWTDNNGITECVSCHSAM >Mature_979_residues MINVYMKWHRGCALAGAAVLSALACAAALFALAGTAAAGTITDCSGCHGMPPVDAPYRNISTGRFMGSHDTHAWLSAGTP NCAICHKMPATYNHRNNNVDFVTTINNSRLTARYRNLTSFTRTASPSFGTCSNVNCHFEKTTPQNGATPLYLDGGKTIQQ KCATCHSAPPADARHAKHAQYYGDVTTACVKCHPDHAAKPGKGAFSHATSAGRRGLVIQFTAFPNTGGSFSGDVSYPLYL YNPSRTGACTNLYCHSPGTKAGSYDPPNQSPDWAGTLGTSCLGCHRGDADSGSPMQTGSHGAHVGVNAAAQIGCVQCHGA TVTNSRQIGDPTQHVNKKADISFEAAIGSAGTYGGAAGHVAKDVGTAYGTCRNIYCHSDGATTTPPFNDYAVTWGAADFP TGCTGCHGGQQGSGNVIASNNHRKHVDASYNGGLGTGIGCVECHAPTVSGNLTIADKARHVNRFKDYSGQRAGTIAAGTC SNVYCHSSGQRSPAYRTMVPWSDTATTYGCSSCHGASTAGPAGVFVSRFGEPNYNNYSSADRNWFNSHNPKHVRSAGDCS TCHAGTTQNGVSLVPGTTLHANTQKNVTFNTAVAGGNSPSYNDLSRRCTNVYCHSNGRQTGRAYATPRWGGSAQNCNACH PIAGLGGAHGIHVGGMIPTFYAYTGNHPVGAAYRYGCANCHPMDPVHHIDGHIDLSLSKNDVNAGGLKTKNGATNGSGLN SAGSGLTGTTGASVRCASVYCHSNGYAANLVYAATPDWYGGSFAGDRCAACHGNSPNSTIAGSSSHYNNRFLGYTGVAGG HQIGIHAMNIYSSPGKRATAGTTGSSSHGNAATATTISCNICHYETVTTARNDDNAVCKTCHYDGNAVGALSGNRAAIAD RSKHVNGLVDVAFKPVAVISKAQMRPASFAIATYSSVWKRNGGYKVSGANDSAKQALDTATMWDGGTKTCSNIACHNGQS VKWTDNNGITECVSCHSAM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 101483; Mature: 101483
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 4.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MINVYMKWHRGCALAGAAVLSALACAAALFALAGTAAAGTITDCSGCHGMPPVDAPYRNI CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC STGRFMGSHDTHAWLSAGTPNCAICHKMPATYNHRNNNVDFVTTINNSRLTARYRNLTSF CCCCEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEECCCEEEEHHHHHHHH TRTASPSFGTCSNVNCHFEKTTPQNGATPLYLDGGKTIQQKCATCHSAPPADARHAKHAQ HHCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHH YYGDVTTACVKCHPDHAAKPGKGAFSHATSAGRRGLVIQFTAFPNTGGSFSGDVSYPLYL HHCCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEE YNPSRTGACTNLYCHSPGTKAGSYDPPNQSPDWAGTLGTSCLGCHRGDADSGSPMQTGSH ECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCCCCCCCCCCCCCCC GAHVGVNAAAQIGCVQCHGATVTNSRQIGDPTQHVNKKADISFEAAIGSAGTYGGAAGHV CCEECCCCHHEEEEEEECCCEECCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCHH AKDVGTAYGTCRNIYCHSDGATTTPPFNDYAVTWGAADFPTGCTGCHGGQQGSGNVIASN HHHHHHHHHCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECC NHRKHVDASYNGGLGTGIGCVECHAPTVSGNLTIADKARHVNRFKDYSGQRAGTIAAGTC CCCEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHCCCCCCCEEEECCC SNVYCHSSGQRSPAYRTMVPWSDTATTYGCSSCHGASTAGPAGVFVSRFGEPNYNNYSSA CCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC DRNWFNSHNPKHVRSAGDCSTCHAGTTQNGVSLVPGTTLHANTQKNVTFNTAVAGGNSPS CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEECCCCEEECCCCCCEEEEEEEECCCCCC YNDLSRRCTNVYCHSNGRQTGRAYATPRWGGSAQNCNACHPIAGLGGAHGIHVGGMIPTF HHHHHHHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEE YAYTGNHPVGAAYRYGCANCHPMDPVHHIDGHIDLSLSKNDVNAGGLKTKNGATNGSGLN EEECCCCCCCCCEECCCCCCCCCCCHHHCCCEEEEEEECCCCCCCCEECCCCCCCCCCCC SAGSGLTGTTGASVRCASVYCHSNGYAANLVYAATPDWYGGSFAGDRCAACHGNSPNSTI CCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCC AGSSSHYNNRFLGYTGVAGGHQIGIHAMNIYSSPGKRATAGTTGSSSHGNAATATTISCN CCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEE ICHYETVTTARNDDNAVCKTCHYDGNAVGALSGNRAAIADRSKHVNGLVDVAFKPVAVIS EEEEEEEECCCCCCCCEEEEEECCCCEEEECCCCCEEECCCCHHCCCEEHHHCCCHHHHH KAQMRPASFAIATYSSVWKRNGGYKVSGANDSAKQALDTATMWDGGTKTCSNIACHNGQS HHHCCCCEEEEHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCHHCCCEECCCCE VKWTDNNGITECVSCHSAM EEECCCCCHHHHHHHHCCC >Mature Secondary Structure MINVYMKWHRGCALAGAAVLSALACAAALFALAGTAAAGTITDCSGCHGMPPVDAPYRNI CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC STGRFMGSHDTHAWLSAGTPNCAICHKMPATYNHRNNNVDFVTTINNSRLTARYRNLTSF CCCCEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCCEEEEEEECCCEEEEHHHHHHHH TRTASPSFGTCSNVNCHFEKTTPQNGATPLYLDGGKTIQQKCATCHSAPPADARHAKHAQ HHCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHH YYGDVTTACVKCHPDHAAKPGKGAFSHATSAGRRGLVIQFTAFPNTGGSFSGDVSYPLYL HHCCCEEEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCEEE YNPSRTGACTNLYCHSPGTKAGSYDPPNQSPDWAGTLGTSCLGCHRGDADSGSPMQTGSH ECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCCCCCCCCCCCCCCCC GAHVGVNAAAQIGCVQCHGATVTNSRQIGDPTQHVNKKADISFEAAIGSAGTYGGAAGHV CCEECCCCHHEEEEEEECCCEECCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCCCCCHH AKDVGTAYGTCRNIYCHSDGATTTPPFNDYAVTWGAADFPTGCTGCHGGQQGSGNVIASN HHHHHHHHHCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEECC NHRKHVDASYNGGLGTGIGCVECHAPTVSGNLTIADKARHVNRFKDYSGQRAGTIAAGTC CCCEEECCCCCCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHCCCCCCCEEEECCC SNVYCHSSGQRSPAYRTMVPWSDTATTYGCSSCHGASTAGPAGVFVSRFGEPNYNNYSSA CCEEECCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCC DRNWFNSHNPKHVRSAGDCSTCHAGTTQNGVSLVPGTTLHANTQKNVTFNTAVAGGNSPS CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCEECCCCEEECCCCCCEEEEEEEECCCCCC YNDLSRRCTNVYCHSNGRQTGRAYATPRWGGSAQNCNACHPIAGLGGAHGIHVGGMIPTF HHHHHHHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEE YAYTGNHPVGAAYRYGCANCHPMDPVHHIDGHIDLSLSKNDVNAGGLKTKNGATNGSGLN EEECCCCCCCCCEECCCCCCCCCCCHHHCCCEEEEEEECCCCCCCCEECCCCCCCCCCCC SAGSGLTGTTGASVRCASVYCHSNGYAANLVYAATPDWYGGSFAGDRCAACHGNSPNSTI CCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCC AGSSSHYNNRFLGYTGVAGGHQIGIHAMNIYSSPGKRATAGTTGSSSHGNAATATTISCN CCCCCCCCCEEEEEECCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEE ICHYETVTTARNDDNAVCKTCHYDGNAVGALSGNRAAIADRSKHVNGLVDVAFKPVAVIS EEEEEEEECCCCCCCCEEEEEECCCCEEEECCCCCEEECCCCHHCCCEEHHHCCCHHHHH KAQMRPASFAIATYSSVWKRNGGYKVSGANDSAKQALDTATMWDGGTKTCSNIACHNGQS HHHCCCCEEEEHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCHHCCCEECCCCE VKWTDNNGITECVSCHSAM EEECCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA