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The map label for this gene is ygiQ [C]

Identifier: 39997964

GI number: 39997964

Start: 3148608

End: 3150425

Strand: Reverse

Name: ygiQ [C]

Synonym: GSU2873

Alternate gene names: 39997964

Gene position: 3150425-3148608 (Counterclockwise)

Preceding gene: 39997965

Following gene: 39997963

Centisome position: 82.6

GC content: 66.94

Gene sequence:

>1818_bases
ATGTCGTTTCTCCCTGTCACCCGCGGCGAAGCCCTGAAGCGCGGCTGGGACGAGCTGGACATCGTCTTCGTCACCGGCGA
CGCCTACGTGGACCATCCCGCCTTTGGCGTGCCGCTCCTGGCGCGCTGGCTCGAGTTCCACGGTTTCCGCGTCGGGATCA
TTCCCCAGCCGGACTGGCGCTCCTGCGAGCCGTTCATGGCGCTGGGGCGCCCCCGGCTCTTCTTTGCCGTTTCCTCCGGT
GCCATGGATTCCATGGTGGCCCACTACACGCCCGCCAGGAAGCTCCGGCACGACGATGCCTACACCCCCGGCAACCGTCA
CGGCGCCCGGCCCAATCGCGCCACCATCGTCTATACCTCCCGGCTGAAAGAGGCCTACCGTGACGTGCCGGTGGTGATCG
GCGGCATCGAAGCGAGCCTGCGGCGCTTTGCCCACTACGACTACTGGGAGGACAAGGTCCGCCGCTCGCTGCTGCTGGAC
GCCAAGGCCGACCTGCTCGTCCATGGCATGGGCGAGCGCCCCATCCTGGAGCTGGCCCGCCGGGTGCGCACCGGCGAACC
GTTCCAGGCCATTGCCGACATCAGGGGGACGGCGGTCGTTCTCGGCCGTGGTGCCGCGCCTCCTGCCGGAGTTGTGGAAC
TTCCCCCCTTCGAAGAGGTGGCCGCCGACCGTCACCGTTACGCCGAGGCGTTTCGCCTCCTTTCCCGCGAGCAGAATCCG
CACTGTGCGCACCCCCTGGTGCAGCGGCACGGCGACCGGACCCTCCTGTGCAATCCTCCGGCCTATCCTCTGGAAGAAGC
GGAACTGGACTCGGTCTATGCGCTCCCGTTTCAGCGGGCGCCTCATCCCTCCCATGGTGAGCCGATTCCCGCCTACGAAC
AGATCCGGGCCTCGGTCACTACTCACCGTGGTTGCTTCGGCGGGTGCTCCTTCTGCGCCATTACCCACCACCAGGGCAAG
GTCATCCAGTCCCGCAGCGAACGCTCGGTGCTCGCCGAGGTGGAGCGGATGGCCGCCATGGCCTGGTTCCGCGGGAGCGT
GAGTGACGTGGGCGGGCCCACCGCGAACATGTACGGCGTGCACTGCGGCAACACCCGGGGCGGTCACGCGTGCCGCCGGG
AAAGCTGTCTCTATCCCTCGCCCTGTCGATACCTGGCGGTGGGCGGGGAGCGGGGAGCCGCTCTGCTGCGGGCGGTGCGG
GGTGTCCGGGGGGTGCGGAATGTGGCGGTTTCTTCGGGCATCCGTTACGATCTGATGGAGCGGCAACCCGCCTACTTCCG
GGAGCTGGTCGCCCACCACGTGGGCGGATTGCTCAAGGTTGCCCCCGAGCACATGGTTGCGCGGGTCACCGACCTCATGC
GAAAGCCCGGCAAGGAGTCCTTCGACCGCTTCTTGGAACGCTTCCGCCGCGAATCCGCCCGGCTCGGAAAAAAGCAGTAC
ATCATACCCTATCTCATGTCAGGTCATCCCGGTTGCACCCTGGATGATATGGTCGAGCTCGCTCTGTTCCTGAAACGGGC
GGGGCTGAGGGTTGAGCAGGTGCAGGATTTCACTCCCACCCCCGGAACCCTTTCCACCTGCATGTACCACACGGGGCTCG
ATCCTTTTGCCGGGGCGCCTGTTCACGTGCCGCGGGGGGATCGGGAGAAGAGGTTGCAGAAAGCCCTGTTGCTCTGGCAT
CTGCCGACCGAGCGGCGTAACGTGCTCGATGCCTTGCGGGCTTGTGGCAGGGAGTCGGTAGCTCGTGAGCTTCTGGGGGG
GGCGGCCGGTGGAGGAGGGGGGCGGTCCGGAAGCGGATTCCGGCCGGGAAGGACTTGA

Upstream 100 bases:

>100_bases
CTCGGGGCAGGCGGTGCAGAATATGAACATCATGTGCGGGCTGCCCGAAGGGCTCGGCCTGGAGGGGCTGGCGCTCGTCC
CCTGACGGCGCCTTCCGGCC

Downstream 100 bases:

>100_bases
CCGGGGTGGTGAGATGTTTTTTAATTGAAGCAGATCGAATTGCCGCCCCGCGAACCCAGGAGTGCCGCCATGCTCGTTAT
CTGTTGTGTGAAGCAGGTAC

Product: radical SAM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 605; Mature: 604

Protein sequence:

>605_residues
MSFLPVTRGEALKRGWDELDIVFVTGDAYVDHPAFGVPLLARWLEFHGFRVGIIPQPDWRSCEPFMALGRPRLFFAVSSG
AMDSMVAHYTPARKLRHDDAYTPGNRHGARPNRATIVYTSRLKEAYRDVPVVIGGIEASLRRFAHYDYWEDKVRRSLLLD
AKADLLVHGMGERPILELARRVRTGEPFQAIADIRGTAVVLGRGAAPPAGVVELPPFEEVAADRHRYAEAFRLLSREQNP
HCAHPLVQRHGDRTLLCNPPAYPLEEAELDSVYALPFQRAPHPSHGEPIPAYEQIRASVTTHRGCFGGCSFCAITHHQGK
VIQSRSERSVLAEVERMAAMAWFRGSVSDVGGPTANMYGVHCGNTRGGHACRRESCLYPSPCRYLAVGGERGAALLRAVR
GVRGVRNVAVSSGIRYDLMERQPAYFRELVAHHVGGLLKVAPEHMVARVTDLMRKPGKESFDRFLERFRRESARLGKKQY
IIPYLMSGHPGCTLDDMVELALFLKRAGLRVEQVQDFTPTPGTLSTCMYHTGLDPFAGAPVHVPRGDREKRLQKALLLWH
LPTERRNVLDALRACGRESVARELLGGAAGGGGGRSGSGFRPGRT

Sequences:

>Translated_605_residues
MSFLPVTRGEALKRGWDELDIVFVTGDAYVDHPAFGVPLLARWLEFHGFRVGIIPQPDWRSCEPFMALGRPRLFFAVSSG
AMDSMVAHYTPARKLRHDDAYTPGNRHGARPNRATIVYTSRLKEAYRDVPVVIGGIEASLRRFAHYDYWEDKVRRSLLLD
AKADLLVHGMGERPILELARRVRTGEPFQAIADIRGTAVVLGRGAAPPAGVVELPPFEEVAADRHRYAEAFRLLSREQNP
HCAHPLVQRHGDRTLLCNPPAYPLEEAELDSVYALPFQRAPHPSHGEPIPAYEQIRASVTTHRGCFGGCSFCAITHHQGK
VIQSRSERSVLAEVERMAAMAWFRGSVSDVGGPTANMYGVHCGNTRGGHACRRESCLYPSPCRYLAVGGERGAALLRAVR
GVRGVRNVAVSSGIRYDLMERQPAYFRELVAHHVGGLLKVAPEHMVARVTDLMRKPGKESFDRFLERFRRESARLGKKQY
IIPYLMSGHPGCTLDDMVELALFLKRAGLRVEQVQDFTPTPGTLSTCMYHTGLDPFAGAPVHVPRGDREKRLQKALLLWH
LPTERRNVLDALRACGRESVARELLGGAAGGGGGRSGSGFRPGRT
>Mature_604_residues
SFLPVTRGEALKRGWDELDIVFVTGDAYVDHPAFGVPLLARWLEFHGFRVGIIPQPDWRSCEPFMALGRPRLFFAVSSGA
MDSMVAHYTPARKLRHDDAYTPGNRHGARPNRATIVYTSRLKEAYRDVPVVIGGIEASLRRFAHYDYWEDKVRRSLLLDA
KADLLVHGMGERPILELARRVRTGEPFQAIADIRGTAVVLGRGAAPPAGVVELPPFEEVAADRHRYAEAFRLLSREQNPH
CAHPLVQRHGDRTLLCNPPAYPLEEAELDSVYALPFQRAPHPSHGEPIPAYEQIRASVTTHRGCFGGCSFCAITHHQGKV
IQSRSERSVLAEVERMAAMAWFRGSVSDVGGPTANMYGVHCGNTRGGHACRRESCLYPSPCRYLAVGGERGAALLRAVRG
VRGVRNVAVSSGIRYDLMERQPAYFRELVAHHVGGLLKVAPEHMVARVTDLMRKPGKESFDRFLERFRRESARLGKKQYI
IPYLMSGHPGCTLDDMVELALFLKRAGLRVEQVQDFTPTPGTLSTCMYHTGLDPFAGAPVHVPRGDREKRLQKALLLWHL
PTERRNVLDALRACGRESVARELLGGAAGGGGGRSGSGFRPGRT

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family

Homologues:

Organism=Escherichia coli, GI48994917, Length=638, Percent_Identity=47.8056426332288, Blast_Score=577, Evalue=1e-165,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2873_GEOSL (P61404)

Other databases:

- EMBL:   AE017180
- RefSeq:   NP_953915.1
- ProteinModelPortal:   P61404
- GeneID:   2688691
- GenomeReviews:   AE017180_GR
- KEGG:   gsu:GSU2873
- NMPDR:   fig|243231.1.peg.2853
- TIGR:   GSU2873
- HOGENOM:   HBG500854
- OMA:   FLPMSRA
- ProtClustDB:   CLSK828983
- BioCyc:   GSUL243231:GSU_2873-MONOMER
- HAMAP:   MF_01251
- InterPro:   IPR006638
- InterPro:   IPR020612
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946
- SMART:   SM00729

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N

EC number: NA

Molecular weight: Translated: 67089; Mature: 66958

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFLPVTRGEALKRGWDELDIVFVTGDAYVDHPAFGVPLLARWLEFHGFRVGIIPQPDWR
CCCCCCCCCHHHHCCCCCEEEEEEECCCEECCCCCCHHHHHHHHHHCCEEEEECCCCCCC
SCEPFMALGRPRLFFAVSSGAMDSMVAHYTPARKLRHDDAYTPGNRHGARPNRATIVYTS
CCCHHHHCCCCEEEEEECCCCHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEHH
RLKEAYRDVPVVIGGIEASLRRFAHYDYWEDKVRRSLLLDAKADLLVHGMGERPILELAR
HHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHH
RVRTGEPFQAIADIRGTAVVLGRGAAPPAGVVELPPFEEVAADRHRYAEAFRLLSREQNP
HHCCCCCHHHHHHCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCC
HCAHPLVQRHGDRTLLCNPPAYPLEEAELDSVYALPFQRAPHPSHGEPIPAYEQIRASVT
CCCCHHHHHCCCCEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHH
THRGCFGGCSFCAITHHQGKVIQSRSERSVLAEVERMAAMAWFRGSVSDVGGPTANMYGV
HCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEE
HCGNTRGGHACRRESCLYPSPCRYLAVGGERGAALLRAVRGVRGVRNVAVSSGIRYDLME
ECCCCCCCCHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RQPAYFRELVAHHVGGLLKVAPEHMVARVTDLMRKPGKESFDRFLERFRRESARLGKKQY
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCE
IIPYLMSGHPGCTLDDMVELALFLKRAGLRVEQVQDFTPTPGTLSTCMYHTGLDPFAGAP
EEHHEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC
VHVPRGDREKRLQKALLLWHLPTERRNVLDALRACGRESVARELLGGAAGGGGGRSGSGF
EECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC
RPGRT
CCCCC
>Mature Secondary Structure 
SFLPVTRGEALKRGWDELDIVFVTGDAYVDHPAFGVPLLARWLEFHGFRVGIIPQPDWR
CCCCCCCCHHHHCCCCCEEEEEEECCCEECCCCCCHHHHHHHHHHCCEEEEECCCCCCC
SCEPFMALGRPRLFFAVSSGAMDSMVAHYTPARKLRHDDAYTPGNRHGARPNRATIVYTS
CCCHHHHCCCCEEEEEECCCCHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCEEEEEHH
RLKEAYRDVPVVIGGIEASLRRFAHYDYWEDKVRRSLLLDAKADLLVHGMGERPILELAR
HHHHHHCCCCEEEECHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHH
RVRTGEPFQAIADIRGTAVVLGRGAAPPAGVVELPPFEEVAADRHRYAEAFRLLSREQNP
HHCCCCCHHHHHHCCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCC
HCAHPLVQRHGDRTLLCNPPAYPLEEAELDSVYALPFQRAPHPSHGEPIPAYEQIRASVT
CCCCHHHHHCCCCEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHH
THRGCFGGCSFCAITHHQGKVIQSRSERSVLAEVERMAAMAWFRGSVSDVGGPTANMYGV
HCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEEE
HCGNTRGGHACRRESCLYPSPCRYLAVGGERGAALLRAVRGVRGVRNVAVSSGIRYDLME
ECCCCCCCCHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
RQPAYFRELVAHHVGGLLKVAPEHMVARVTDLMRKPGKESFDRFLERFRRESARLGKKQY
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCE
IIPYLMSGHPGCTLDDMVELALFLKRAGLRVEQVQDFTPTPGTLSTCMYHTGLDPFAGAP
EEHHEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHHCCCCCCCCCC
VHVPRGDREKRLQKALLLWHLPTERRNVLDALRACGRESVARELLGGAAGGGGGRSGSGF
EECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCC
RPGRT
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA