Click here to switch to the map view.

The map label for this gene is fixA [H]

Identifier: 39997963

GI number: 39997963

Start: 3147726

End: 3148538

Strand: Reverse

Name: fixA [H]

Synonym: GSU2872

Alternate gene names: 39997963

Gene position: 3148538-3147726 (Counterclockwise)

Preceding gene: 39997964

Following gene: 39997962

Centisome position: 82.55

GC content: 61.87

Gene sequence:

>813_bases
ATGCTCGTTATCTGTTGTGTGAAGCAGGTACCCGACACGACTCAGGTGCAGATCGATCCCGTTACCAATACCCTGGTGCG
GGAGGGGATCCCATTTATCGTCAATCCTTACGATACTCACGCCCTGGAGGAAAGCCTGCGGCTCAAGGATCGTTATGGCG
TTCGGGTGGCCGCTATCTCCATGGGGCCGCCCAATGCCGAAGCAACCATCCGCAAGGCAGTGGCGCTTGGCGTTGACCGG
GCGATTCTGCTGTCCGATCGCGCCTTCGGCGGGGCGGACACCCTCGCCACGAGCAATGTCCTCTCCGCCGCAATCCGCAA
ACTTGCCGAAGAGGACGAAGTGGCGCTGGTCCTTTGCGGGAAGCAGACCATTGATGGCGATACGGCGCAGGTGGGGCCCG
GCATCGCCACCCGTCTGGGTATGACCCAGCTTACGCTGGTGGACCGCATCGAGGGCATCGACATGGATGCCCGCACGATC
CAGGTGCGCCGCAAGCTGGAGGGGCGGTACGAACTGGTTAAGGGACCGATCCCTGCCATGTTGACGGTGGTGCGGGAGAT
CAACCGGCCACGCTACCCCGCAGTTCCTGCCCGGCTCATGGCGGCTTCCTGCGCGGTGGAGGTCTGGAACAACGAGGTGT
TGCGGCTTGATTCTGCCTCCATTGGACTCAAGGGCTCACCAACCTGGGTCAGCAGGATCTTTTCACCCGAGCGCGCAAAG
GGACAGATCCTCGGTGACGGCGAGAAGGACCCTGCCGGGACGGCATGTCTTCTTGTCGATACGCTTCGCGCCAAGGATTT
GCTGCCGTTCTAG

Upstream 100 bases:

>100_bases
CGGAAGCGGATTCCGGCCGGGAAGGACTTGACCGGGGTGGTGAGATGTTTTTTAATTGAAGCAGATCGAATTGCCGCCCC
GCGAACCCAGGAGTGCCGCC

Downstream 100 bases:

>100_bases
TTCTCGGAGCGCTTGAGCGGAATCCATCGAGACCCCGGTCGAGGAGAGATAAATTTTCGCTTGACACGTGCGCGATAGTG
GATTACAAATCTGATTCTTG

Product: electron transfer flavoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MLVICCVKQVPDTTQVQIDPVTNTLVREGIPFIVNPYDTHALEESLRLKDRYGVRVAAISMGPPNAEATIRKAVALGVDR
AILLSDRAFGGADTLATSNVLSAAIRKLAEEDEVALVLCGKQTIDGDTAQVGPGIATRLGMTQLTLVDRIEGIDMDARTI
QVRRKLEGRYELVKGPIPAMLTVVREINRPRYPAVPARLMAASCAVEVWNNEVLRLDSASIGLKGSPTWVSRIFSPERAK
GQILGDGEKDPAGTACLLVDTLRAKDLLPF

Sequences:

>Translated_270_residues
MLVICCVKQVPDTTQVQIDPVTNTLVREGIPFIVNPYDTHALEESLRLKDRYGVRVAAISMGPPNAEATIRKAVALGVDR
AILLSDRAFGGADTLATSNVLSAAIRKLAEEDEVALVLCGKQTIDGDTAQVGPGIATRLGMTQLTLVDRIEGIDMDARTI
QVRRKLEGRYELVKGPIPAMLTVVREINRPRYPAVPARLMAASCAVEVWNNEVLRLDSASIGLKGSPTWVSRIFSPERAK
GQILGDGEKDPAGTACLLVDTLRAKDLLPF
>Mature_270_residues
MLVICCVKQVPDTTQVQIDPVTNTLVREGIPFIVNPYDTHALEESLRLKDRYGVRVAAISMGPPNAEATIRKAVALGVDR
AILLSDRAFGGADTLATSNVLSAAIRKLAEEDEVALVLCGKQTIDGDTAQVGPGIATRLGMTQLTLVDRIEGIDMDARTI
QVRRKLEGRYELVKGPIPAMLTVVREINRPRYPAVPARLMAASCAVEVWNNEVLRLDSASIGLKGSPTWVSRIFSPERAK
GQILGDGEKDPAGTACLLVDTLRAKDLLPF

Specific function: May play a role in a redox process involved in nitrogen fixation [H]

COG id: COG2086

COG function: function code C; Electron transfer flavoprotein, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF beta-subunit/fixA family [H]

Homologues:

Organism=Homo sapiens, GI4503609, Length=208, Percent_Identity=33.1730769230769, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI62420877, Length=195, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=3e-20,
Organism=Escherichia coli, GI87081682, Length=263, Percent_Identity=30.0380228136882, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI2367123, Length=212, Percent_Identity=27.8301886792453, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25141345, Length=200, Percent_Identity=30, Blast_Score=97, Evalue=6e-21,
Organism=Saccharomyces cerevisiae, GI6321646, Length=212, Percent_Identity=31.1320754716981, Blast_Score=86, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24651147, Length=198, Percent_Identity=31.8181818181818, Blast_Score=92, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24651145, Length=198, Percent_Identity=31.8181818181818, Blast_Score=92, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000049
- InterPro:   IPR014730
- InterPro:   IPR012255
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01012 ETF [H]

EC number: NA

Molecular weight: Translated: 29180; Mature: 29180

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVICCVKQVPDTTQVQIDPVTNTLVREGIPFIVNPYDTHALEESLRLKDRYGVRVAAIS
CEEEEEECCCCCCCEEEECCCHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCEEEEEEE
MGPPNAEATIRKAVALGVDRAILLSDRAFGGADTLATSNVLSAAIRKLAEEDEVALVLCG
CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
KQTIDGDTAQVGPGIATRLGMTQLTLVDRIEGIDMDARTIQVRRKLEGRYELVKGPIPAM
CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEECCCCHHHH
LTVVREINRPRYPAVPARLMAASCAVEVWNNEVLRLDSASIGLKGSPTWVSRIFSPERAK
HHHHHHHCCCCCCCHHHHHHHHHHHHEECCCCEEEECCCCCCCCCCHHHHHHHCCCCCCC
GQILGDGEKDPAGTACLLVDTLRAKDLLPF
CCEECCCCCCCCCCEEEEEEHHHHHCCCCC
>Mature Secondary Structure
MLVICCVKQVPDTTQVQIDPVTNTLVREGIPFIVNPYDTHALEESLRLKDRYGVRVAAIS
CEEEEEECCCCCCCEEEECCCHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCEEEEEEE
MGPPNAEATIRKAVALGVDRAILLSDRAFGGADTLATSNVLSAAIRKLAEEDEVALVLCG
CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
KQTIDGDTAQVGPGIATRLGMTQLTLVDRIEGIDMDARTIQVRRKLEGRYELVKGPIPAM
CCCCCCCCCCCCCCHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEECCCCHHHH
LTVVREINRPRYPAVPARLMAASCAVEVWNNEVLRLDSASIGLKGSPTWVSRIFSPERAK
HHHHHHHCCCCCCCHHHHHHHHHHHHEECCCCEEEECCCCCCCCCCHHHHHHHCCCCCCC
GQILGDGEKDPAGTACLLVDTLRAKDLLPF
CCEECCCCCCCCCCEEEEEEHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA