| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is nifD [H]
Identifier: 39997913
GI number: 39997913
Start: 3102400
End: 3103839
Strand: Reverse
Name: nifD [H]
Synonym: GSU2820
Alternate gene names: 39997913
Gene position: 3103839-3102400 (Counterclockwise)
Preceding gene: 39997914
Following gene: 39997912
Centisome position: 81.38
GC content: 60.9
Gene sequence:
>1440_bases ATGTCCAATGCAGCCAAAAGAGTTGAAGGAATAACCAAAGAGTCGACTCAGGAGATGATCGACAAGGTGTTGGAGGTTTA CCCGGAAAAAGGGCGTAAGAAGCGCGCTCCACACCTGGCCCCCAACGACGGCGTCAGTTCCTGCGTAAAGTCCAACCGCA AGACCGTTCCCGGCGTCATGAGCGCCCGGGGCTGCGCCTACGCCGGCGCCAAGGGGGTCGTCTGGGGCCCCATCCGCGAC ATGGTTCACATCTCCCATGGTCCGGTGGGGTGCGGCTGGTACTCCTGGGGTACTCGCCGCAACCTGATGAGCGGCATCAA CGGGGTCACCAACTTCGGCATGCAGTTCACGTCGGATTTCCAGGAAAAGGATATCGTCTACGGCGGGGACAAGAAGTTGA AGCAACTGCTGGAGGAGGCCAAGGGACTGTTCCCGCTGGCCAAGGGGATTTCGGTCCTGTCCGAGTGTCCGGTGGGCCTC ATCGGCGACGACATCAACGCCGTGGCCAAGCAGTCCGCCAAGGAGCTGGACATCCCGGTCATACCCTGTAACTGCGAAGG GTTCCGCGGGGTCAGCCAGTCCCTGGGCCACCACATTTCCAACGACACCATCCGCGACTTCATCATCGGCACCCGGGAGT TTGCCGAGCCCGAGAGCCCGTACGACATCGCCCTTATCGGCGACTACAACATCGGCGGTGACGTCTGGAGCGCCAAGGCG CTGCTGGAGGAGATCGGCCTCAACGTGAAGGCCACCTGGACCGGCGACGGCGAGTTGGACCGGATCGCCGCCACCCACAC GGTGAAGCTCAACCTCATCCACTGCTACCGCTCCATGAACTACATGTGCCGCGTGATGGAAGAGAAGTACGGCATCCCCT GGCTGGAGTTCAACTTCTTCGGCCCCAGCAAGATCAAGGAGAGCCTGCGCGCGATTGGTGAGCGGTTCGACGACAGGATC AAGGAGAACGTGGAAAAGGTCATTGCCAAGTACGACCCGATCATGCAGGCGGTGATCGACGAGTATCGGCCGCGGCTCGA AGGGAAGAAGGTCATGATCTACGTCGGCGGTCTCCGTCCCCGCCACACCGTGGGCGCCTACGAGGACCTGGGGATGGTGG TTGTCGGCACCGGCTACGAGTTCGCCCACGGCGACGACTACGAGCGGACCTCCCCCGAGATGCCGGTCGATACGGTCATT TTTGACGATGCCTCCGAGTTCGAGCTGGAGAAGTTCGCCCATCAGATCAAGCCCGACCTGGTTGCCTCCGGCATCAAAGA GAAGTACGTGTTCCAGAAAATGGGGCTTCCCTTCCGCCAGATGCACAGCTGGGACTACTCCGGTCCCTATCACGGCTACC AGGGATTCCCGATCTTTGCCCGGGACATTGACATGGCGGTGAATAGCCCCACGTGGTCGCTGATCAAGTCGCCGTTCTAG
Upstream 100 bases:
>100_bases TACCCACCCCCTCACCGGGCCGGCCTCAAAATCGTTCGCCAACGGTTCCGCGCAACCAGGTAAGGGCGCACACTGTGCGG CCTTTGACAGGAGAATACTT
Downstream 100 bases:
>100_bases ACGGAGTCCGCTTTTCCGCCATCTCGGCGTGCCTTCGTCATCGTTTGTGCGGCCTCCGCGCTCTTCATCGGCGCCACGGT CCTGACGAAAATCGGCGTCG
Product: nitrogenase molybdenum-iron protein, alpha chain
Products: NA
Alternate protein names: Dinitrogenase; Nitrogenase component I [H]
Number of amino acids: Translated: 479; Mature: 478
Protein sequence:
>479_residues MSNAAKRVEGITKESTQEMIDKVLEVYPEKGRKKRAPHLAPNDGVSSCVKSNRKTVPGVMSARGCAYAGAKGVVWGPIRD MVHISHGPVGCGWYSWGTRRNLMSGINGVTNFGMQFTSDFQEKDIVYGGDKKLKQLLEEAKGLFPLAKGISVLSECPVGL IGDDINAVAKQSAKELDIPVIPCNCEGFRGVSQSLGHHISNDTIRDFIIGTREFAEPESPYDIALIGDYNIGGDVWSAKA LLEEIGLNVKATWTGDGELDRIAATHTVKLNLIHCYRSMNYMCRVMEEKYGIPWLEFNFFGPSKIKESLRAIGERFDDRI KENVEKVIAKYDPIMQAVIDEYRPRLEGKKVMIYVGGLRPRHTVGAYEDLGMVVVGTGYEFAHGDDYERTSPEMPVDTVI FDDASEFELEKFAHQIKPDLVASGIKEKYVFQKMGLPFRQMHSWDYSGPYHGYQGFPIFARDIDMAVNSPTWSLIKSPF
Sequences:
>Translated_479_residues MSNAAKRVEGITKESTQEMIDKVLEVYPEKGRKKRAPHLAPNDGVSSCVKSNRKTVPGVMSARGCAYAGAKGVVWGPIRD MVHISHGPVGCGWYSWGTRRNLMSGINGVTNFGMQFTSDFQEKDIVYGGDKKLKQLLEEAKGLFPLAKGISVLSECPVGL IGDDINAVAKQSAKELDIPVIPCNCEGFRGVSQSLGHHISNDTIRDFIIGTREFAEPESPYDIALIGDYNIGGDVWSAKA LLEEIGLNVKATWTGDGELDRIAATHTVKLNLIHCYRSMNYMCRVMEEKYGIPWLEFNFFGPSKIKESLRAIGERFDDRI KENVEKVIAKYDPIMQAVIDEYRPRLEGKKVMIYVGGLRPRHTVGAYEDLGMVVVGTGYEFAHGDDYERTSPEMPVDTVI FDDASEFELEKFAHQIKPDLVASGIKEKYVFQKMGLPFRQMHSWDYSGPYHGYQGFPIFARDIDMAVNSPTWSLIKSPF >Mature_478_residues SNAAKRVEGITKESTQEMIDKVLEVYPEKGRKKRAPHLAPNDGVSSCVKSNRKTVPGVMSARGCAYAGAKGVVWGPIRDM VHISHGPVGCGWYSWGTRRNLMSGINGVTNFGMQFTSDFQEKDIVYGGDKKLKQLLEEAKGLFPLAKGISVLSECPVGLI GDDINAVAKQSAKELDIPVIPCNCEGFRGVSQSLGHHISNDTIRDFIIGTREFAEPESPYDIALIGDYNIGGDVWSAKAL LEEIGLNVKATWTGDGELDRIAATHTVKLNLIHCYRSMNYMCRVMEEKYGIPWLEFNFFGPSKIKESLRAIGERFDDRIK ENVEKVIAKYDPIMQAVIDEYRPRLEGKKVMIYVGGLRPRHTVGAYEDLGMVVVGTGYEFAHGDDYERTSPEMPVDTVIF DDASEFELEKFAHQIKPDLVASGIKEKYVFQKMGLPFRQMHSWDYSGPYHGYQGFPIFARDIDMAVNSPTWSLIKSPF
Specific function: This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation [H]
COG id: COG2710
COG function: function code C; Nitrogenase molybdenum-iron protein, alpha and beta chains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nifD/nifK/nifE/nifN family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000510 - InterPro: IPR010143 - InterPro: IPR000318 - InterPro: IPR005972 [H]
Pfam domain/function: PF00148 Oxidored_nitro [H]
EC number: =1.18.6.1 [H]
Molecular weight: Translated: 53490; Mature: 53359
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: PS00435 PEROXIDASE_1 ; PS00699 NITROGENASE_1_1 ; PS00090 NITROGENASE_1_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNAAKRVEGITKESTQEMIDKVLEVYPEKGRKKRAPHLAPNDGVSSCVKSNRKTVPGVM CCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHH SARGCAYAGAKGVVWGPIRDMVHISHGPVGCGWYSWGTRRNLMSGINGVTNFGMQFTSDF HCCCCCCCCCCCCEECCHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCC QEKDIVYGGDKKLKQLLEEAKGLFPLAKGISVLSECPVGLIGDDINAVAKQSAKELDIPV CCCCCEECCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCE IPCNCEGFRGVSQSLGHHISNDTIRDFIIGTREFAEPESPYDIALIGDYNIGGDVWSAKA EECCCCCCCHHHHHHHHHCCCCHHHHHHHCCHHHCCCCCCCEEEEEECCCCCCHHHHHHH LLEEIGLNVKATWTGDGELDRIAATHTVKLNLIHCYRSMNYMCRVMEEKYGIPWLEFNFF HHHHHCCCEEEEECCCCCHHHEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECC GPSKIKESLRAIGERFDDRIKENVEKVIAKYDPIMQAVIDEYRPRLEGKKVMIYVGGLRP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC RHTVGAYEDLGMVVVGTGYEFAHGDDYERTSPEMPVDTVIFDDASEFELEKFAHQIKPDL CCCCCCHHCCCEEEEECCEECCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCHHH VASGIKEKYVFQKMGLPFRQMHSWDYSGPYHGYQGFPIFARDIDMAVNSPTWSLIKSPF HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCHHHHCCCC >Mature Secondary Structure SNAAKRVEGITKESTQEMIDKVLEVYPEKGRKKRAPHLAPNDGVSSCVKSNRKTVPGVM CCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHH SARGCAYAGAKGVVWGPIRDMVHISHGPVGCGWYSWGTRRNLMSGINGVTNFGMQFTSDF HCCCCCCCCCCCCEECCHHHHEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCC QEKDIVYGGDKKLKQLLEEAKGLFPLAKGISVLSECPVGLIGDDINAVAKQSAKELDIPV CCCCCEECCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCCCE IPCNCEGFRGVSQSLGHHISNDTIRDFIIGTREFAEPESPYDIALIGDYNIGGDVWSAKA EECCCCCCCHHHHHHHHHCCCCHHHHHHHCCHHHCCCCCCCEEEEEECCCCCCHHHHHHH LLEEIGLNVKATWTGDGELDRIAATHTVKLNLIHCYRSMNYMCRVMEEKYGIPWLEFNFF HHHHHCCCEEEEECCCCCHHHEEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEEEECC GPSKIKESLRAIGERFDDRIKENVEKVIAKYDPIMQAVIDEYRPRLEGKKVMIYVGGLRP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC RHTVGAYEDLGMVVVGTGYEFAHGDDYERTSPEMPVDTVIFDDASEFELEKFAHQIKPDL CCCCCCHHCCCEEEEECCEECCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCHHH VASGIKEKYVFQKMGLPFRQMHSWDYSGPYHGYQGFPIFARDIDMAVNSPTWSLIKSPF HHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCEEEEEHHHHHCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840 [H]