Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
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Accession | NC_002939 |
Length | 3,814,139 |
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The map label for this gene is 39997297
Identifier: 39997297
GI number: 39997297
Start: 2412324
End: 2413919
Strand: Direct
Name: 39997297
Synonym: GSU2199
Alternate gene names: NA
Gene position: 2412324-2413919 (Clockwise)
Preceding gene: 39997287
Following gene: 39997298
Centisome position: 63.25
GC content: 50.38
Gene sequence:
>1596_bases ATGAAGCGTATGTCCAAAAAGGTTCTGGCAGCTGCCCTTCTGCTCGGTCTCAGCCAACCGTTCTCGGTTATGGCGGCCGA TACCGACCTGCAGAAGAAGATGGAAAGCCTCGAGAAAGAACTTGAGGCCCTGAAGCAGCAGATGCAGGACACCGACAAGA AGGTCGATAAGGTTGAGCAGAAGTCCCTGGGTCGCTGGCTGACCATCAGCGGGGATTACCGGTTCAGGGTCGACTCTCTC AAGGGCAAAATTGTAGATCACGCCAGCGGTCCTGTGTTCGGACAAACATACATGGCAAGGCTACTGGCAGGAGATACCCC CAACGTCGCACAGGCGACAGCTTTTGCCGCATCACAGCAGGCTGGTCAAGGATACAAACCCAAAAACGACTCTCTTATGA CCCACCGCTTCGGGCTTAATCTTAAAGCCAAAGCCACCAAAGATGTTTCTGTCACTGCACGCCTTCTCATGTACAAAACC GCAGGCGCTCAAGATGATGATGCCGTAACCCCGGGTTACTTTGCAGATCGAACCGGCGTATTCGATGGAACACTTGGCCA CATACCTTCTGACGGTCGACTCGCCGTTGACCGCGCCTACGCGACATGGAGCAACATCGGTGACGAGCCAATTTGGTTCT CAGTTGGTCGTAGGCCCTCAACTGGCGGAGTACCAACTCACCTTAAGGAGAACAGGGAAAAACCTGACAGCAGTGGAACT CCTGCGCTTCTAGTTGATTATGCCTTTGACGGCATGACTGTAGGATGGGCGCCTGACCTTGAGGCGCTACCAGGAGCATA TGCTAAGATCTGCTATGGTAGAGGTTTCGAAAACGGATTCACTGGGAAAAACGTCAACAATAGTCTCCATGACACCGACA TGCTCGGCGTGCAGATTATACCTTATGACACAGATGCACTCAGTATATTTTTCCAGTACAACAGAGGCTTCAACATTTTC GACTTTCCGAAGATGACTAGCTCAGCATTCGGCGACACGGCTCCAAGTACTGACCTAGGTGCCATCGACTGGTATGGGCT AAACTTCCTAGGCAAAGTAAAGAACATCGGCATTGGTAATTTCAATTGGTTTGTAAGTGGTGCCATAAGTGACGCTCAAC CGAACAAAAATGTATCTGTCGCCGCAGGCAATCTCGGTCTTATGAACGGCACTTTCCTTGGCCAACAGGATGCAAGCAGC TTCAAGGATCGAACCGGTTGGGCCGTATACGCTGGCGGAAGGTACGACATCGAGTCAACCGGCACCAAACTCGGCTTCGA ATACAACCATGGTTCCAAAAACTGGATCACCTTTGCTCCGTCTGCCGATGATATGTGGACATCAAAGGTGGGAACCCGAG GCAACGCCTACGAGGGTTACATAATTCAAGAACTGAAGCTGCAGCCCATCTCTTCATATCTGAGCAAAGTATTTTTCAAG CTCGGCTATCAGTATTATGATTTTGAGTACACTGGCAGTAACAATTGGGTCGGAGCACCCCAAAAAATTGCAGACATTAA AGCTTCCGATCTCCAACTGATGGCTCCAGTTAAATACGCACAAGACATCTATGCAACCTTCGAGGTACACTTCTAG
Upstream 100 bases:
>100_bases GCATCAATACGGCGGACTCAAACGCATCCCCCCGCCGAAGTATCAAAGCGGTTCGCGGCACGGTAGTTCACTTTTATTGT TTTATGGGAAAGGAGAGCAC
Downstream 100 bases:
>100_bases GCCACAGCAGATGAACACCGGGAGGGAGGGCGCCAGCCCCCCTCCCCCAGCCCTACGGGGCACCATGCCACAGGCGGCCT GCTCCGCCAACAACAGTACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 531; Mature: 531
Protein sequence:
>531_residues MKRMSKKVLAAALLLGLSQPFSVMAADTDLQKKMESLEKELEALKQQMQDTDKKVDKVEQKSLGRWLTISGDYRFRVDSL KGKIVDHASGPVFGQTYMARLLAGDTPNVAQATAFAASQQAGQGYKPKNDSLMTHRFGLNLKAKATKDVSVTARLLMYKT AGAQDDDAVTPGYFADRTGVFDGTLGHIPSDGRLAVDRAYATWSNIGDEPIWFSVGRRPSTGGVPTHLKENREKPDSSGT PALLVDYAFDGMTVGWAPDLEALPGAYAKICYGRGFENGFTGKNVNNSLHDTDMLGVQIIPYDTDALSIFFQYNRGFNIF DFPKMTSSAFGDTAPSTDLGAIDWYGLNFLGKVKNIGIGNFNWFVSGAISDAQPNKNVSVAAGNLGLMNGTFLGQQDASS FKDRTGWAVYAGGRYDIESTGTKLGFEYNHGSKNWITFAPSADDMWTSKVGTRGNAYEGYIIQELKLQPISSYLSKVFFK LGYQYYDFEYTGSNNWVGAPQKIADIKASDLQLMAPVKYAQDIYATFEVHF
Sequences:
>Translated_531_residues MKRMSKKVLAAALLLGLSQPFSVMAADTDLQKKMESLEKELEALKQQMQDTDKKVDKVEQKSLGRWLTISGDYRFRVDSL KGKIVDHASGPVFGQTYMARLLAGDTPNVAQATAFAASQQAGQGYKPKNDSLMTHRFGLNLKAKATKDVSVTARLLMYKT AGAQDDDAVTPGYFADRTGVFDGTLGHIPSDGRLAVDRAYATWSNIGDEPIWFSVGRRPSTGGVPTHLKENREKPDSSGT PALLVDYAFDGMTVGWAPDLEALPGAYAKICYGRGFENGFTGKNVNNSLHDTDMLGVQIIPYDTDALSIFFQYNRGFNIF DFPKMTSSAFGDTAPSTDLGAIDWYGLNFLGKVKNIGIGNFNWFVSGAISDAQPNKNVSVAAGNLGLMNGTFLGQQDASS FKDRTGWAVYAGGRYDIESTGTKLGFEYNHGSKNWITFAPSADDMWTSKVGTRGNAYEGYIIQELKLQPISSYLSKVFFK LGYQYYDFEYTGSNNWVGAPQKIADIKASDLQLMAPVKYAQDIYATFEVHF >Mature_531_residues MKRMSKKVLAAALLLGLSQPFSVMAADTDLQKKMESLEKELEALKQQMQDTDKKVDKVEQKSLGRWLTISGDYRFRVDSL KGKIVDHASGPVFGQTYMARLLAGDTPNVAQATAFAASQQAGQGYKPKNDSLMTHRFGLNLKAKATKDVSVTARLLMYKT AGAQDDDAVTPGYFADRTGVFDGTLGHIPSDGRLAVDRAYATWSNIGDEPIWFSVGRRPSTGGVPTHLKENREKPDSSGT PALLVDYAFDGMTVGWAPDLEALPGAYAKICYGRGFENGFTGKNVNNSLHDTDMLGVQIIPYDTDALSIFFQYNRGFNIF DFPKMTSSAFGDTAPSTDLGAIDWYGLNFLGKVKNIGIGNFNWFVSGAISDAQPNKNVSVAAGNLGLMNGTFLGQQDASS FKDRTGWAVYAGGRYDIESTGTKLGFEYNHGSKNWITFAPSADDMWTSKVGTRGNAYEGYIIQELKLQPISSYLSKVFFK LGYQYYDFEYTGSNNWVGAPQKIADIKASDLQLMAPVKYAQDIYATFEVHF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58265; Mature: 58265
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRMSKKVLAAALLLGLSQPFSVMAADTDLQKKMESLEKELEALKQQMQDTDKKVDKVEQ CCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSLGRWLTISGDYRFRVDSLKGKIVDHASGPVFGQTYMARLLAGDTPNVAQATAFAASQQ HHCCCEEEECCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH AGQGYKPKNDSLMTHRFGLNLKAKATKDVSVTARLLMYKTAGAQDDDAVTPGYFADRTGV CCCCCCCCCCCEEEEEECCEEEECCCCCHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCC FDGTLGHIPSDGRLAVDRAYATWSNIGDEPIWFSVGRRPSTGGVPTHLKENREKPDSSGT CCCCCCCCCCCCCEEEEEHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCC PALLVDYAFDGMTVGWAPDLEALPGAYAKICYGRGFENGFTGKNVNNSLHDTDMLGVQII CEEEEEECCCCEEECCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEE PYDTDALSIFFQYNRGFNIFDFPKMTSSAFGDTAPSTDLGAIDWYGLNFLGKVKNIGIGN ECCCCEEEEEEEECCCCCEEECCCCHHHHCCCCCCCCCCCCEEEECCCHHHHHHCCCCCC FNWFVSGAISDAQPNKNVSVAAGNLGLMNGTFLGQQDASSFKDRTGWAVYAGGRYDIEST CEEEEEEEECCCCCCCCEEEEECCEEEECCEECCCCCHHHHHCCCCEEEEECCEEEECCC GTKLGFEYNHGSKNWITFAPSADDMWTSKVGTRGNAYEGYIIQELKLQPISSYLSKVFFK CCEEEEEECCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHH LGYQYYDFEYTGSNNWVGAPQKIADIKASDLQLMAPVKYAQDIYATFEVHF HCCEEEEEEECCCCCCCCCCHHHHCCCCCCEEEECCHHHHHHEEEEEEEEC >Mature Secondary Structure MKRMSKKVLAAALLLGLSQPFSVMAADTDLQKKMESLEKELEALKQQMQDTDKKVDKVEQ CCHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KSLGRWLTISGDYRFRVDSLKGKIVDHASGPVFGQTYMARLLAGDTPNVAQATAFAASQQ HHCCCEEEECCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH AGQGYKPKNDSLMTHRFGLNLKAKATKDVSVTARLLMYKTAGAQDDDAVTPGYFADRTGV CCCCCCCCCCCEEEEEECCEEEECCCCCHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCC FDGTLGHIPSDGRLAVDRAYATWSNIGDEPIWFSVGRRPSTGGVPTHLKENREKPDSSGT CCCCCCCCCCCCCEEEEEHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCC PALLVDYAFDGMTVGWAPDLEALPGAYAKICYGRGFENGFTGKNVNNSLHDTDMLGVQII CEEEEEECCCCEEECCCCCHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEE PYDTDALSIFFQYNRGFNIFDFPKMTSSAFGDTAPSTDLGAIDWYGLNFLGKVKNIGIGN ECCCCEEEEEEEECCCCCEEECCCCHHHHCCCCCCCCCCCCEEEECCCHHHHHHCCCCCC FNWFVSGAISDAQPNKNVSVAAGNLGLMNGTFLGQQDASSFKDRTGWAVYAGGRYDIEST CEEEEEEEECCCCCCCCEEEEECCEEEECCEECCCCCHHHHHCCCCEEEEECCEEEECCC GTKLGFEYNHGSKNWITFAPSADDMWTSKVGTRGNAYEGYIIQELKLQPISSYLSKVFFK CCEEEEEECCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEEEEECCHHHHHHHHHHHH LGYQYYDFEYTGSNNWVGAPQKIADIKASDLQLMAPVKYAQDIYATFEVHF HCCEEEEEEECCCCCCCCCCHHHHCCCCCCEEEECCHHHHHHEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA