Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
---|---|
Accession | NC_002939 |
Length | 3,814,139 |
Click here to switch to the map view.
The map label for this gene is 39997275
Identifier: 39997275
GI number: 39997275
Start: 2387321
End: 2387878
Strand: Direct
Name: 39997275
Synonym: GSU2177
Alternate gene names: NA
Gene position: 2387321-2387878 (Clockwise)
Preceding gene: 39997274
Following gene: 39997276
Centisome position: 62.59
GC content: 48.57
Gene sequence:
>558_bases ATGGATTTTGACAAGGCAGTTGCGTGGGTCGAAGAAAATAAGGCGATGATCAAGGGATATATCGCCAAGTACCGGAATTT TTCACCGTATGAAGAACGTGATTACATGCAGGAAGCCTACGAATCTGCTTTCGTAGCCGCATGTCGCTGCGGTGAGAAGA AGATCAAATTCGAGGCTGCCTTCTGGAAAGTATTTCGGAATCAGATCAGTGTCATAACGCCAGCGCCGGATATTCTGACC CATGGATCGAATTCGATTCCCTCACATTTCTGTTCTGACGACCTTTCGGCTGTTGCTGAAAAACGCTCACAAGAAAGACA GAAAGAGCCCGACATCGAGGCGATATTCCAGTCGGTGCGCCATCACCTCACGGAAAAGGAGCAACAGGTCCTTTATTGGG CTCTCGGAATCGGTATGGAAGGACAGATGTCGAATTACGAGATTGCTGATCGGCTTGGATGCGTTGTTTCGAACGTCAGA GATATCCTCAGCAGAGCACTCGACCGGATCAAATCCCTTGTCGAGAAAGGCAGCATCGATCCCAAGAATTTGGTCTGA
Upstream 100 bases:
>100_bases ATTCATTCTGGCACGGCCTGGCTCACACAGATGAGCACAGGCAAAGCCGGTCATCGGAGCACGACTTCGAGGCCGGCTTT TTTTTATTCGGAGCGAGACC
Downstream 100 bases:
>100_bases TGTTGCAGCATATGCTTCATCACGAAAGGAGATGCACCATGAACCTGGAACAGGCAGCACAGCAGTATAAACCAGTACCA CTGAAAGCCCTTAAACGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 185; Mature: 185
Protein sequence:
>185_residues MDFDKAVAWVEENKAMIKGYIAKYRNFSPYEERDYMQEAYESAFVAACRCGEKKIKFEAAFWKVFRNQISVITPAPDILT HGSNSIPSHFCSDDLSAVAEKRSQERQKEPDIEAIFQSVRHHLTEKEQQVLYWALGIGMEGQMSNYEIADRLGCVVSNVR DILSRALDRIKSLVEKGSIDPKNLV
Sequences:
>Translated_185_residues MDFDKAVAWVEENKAMIKGYIAKYRNFSPYEERDYMQEAYESAFVAACRCGEKKIKFEAAFWKVFRNQISVITPAPDILT HGSNSIPSHFCSDDLSAVAEKRSQERQKEPDIEAIFQSVRHHLTEKEQQVLYWALGIGMEGQMSNYEIADRLGCVVSNVR DILSRALDRIKSLVEKGSIDPKNLV >Mature_185_residues MDFDKAVAWVEENKAMIKGYIAKYRNFSPYEERDYMQEAYESAFVAACRCGEKKIKFEAAFWKVFRNQISVITPAPDILT HGSNSIPSHFCSDDLSAVAEKRSQERQKEPDIEAIFQSVRHHLTEKEQQVLYWALGIGMEGQMSNYEIADRLGCVVSNVR DILSRALDRIKSLVEKGSIDPKNLV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21172; Mature: 21172
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFDKAVAWVEENKAMIKGYIAKYRNFSPYEERDYMQEAYESAFVAACRCGEKKIKFEAA CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH FWKVFRNQISVITPAPDILTHGSNSIPSHFCSDDLSAVAEKRSQERQKEPDIEAIFQSVR HHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH HHLTEKEQQVLYWALGIGMEGQMSNYEIADRLGCVVSNVRDILSRALDRIKSLVEKGSID HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PKNLV CCCCC >Mature Secondary Structure MDFDKAVAWVEENKAMIKGYIAKYRNFSPYEERDYMQEAYESAFVAACRCGEKKIKFEAA CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH FWKVFRNQISVITPAPDILTHGSNSIPSHFCSDDLSAVAEKRSQERQKEPDIEAIFQSVR HHHHHHHHHCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH HHLTEKEQQVLYWALGIGMEGQMSNYEIADRLGCVVSNVRDILSRALDRIKSLVEKGSID HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PKNLV CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA