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The map label for this gene is intZ [H]

Identifier: 39997217

GI number: 39997217

Start: 2337618

End: 2338979

Strand: Direct

Name: intZ [H]

Synonym: GSU2119

Alternate gene names: 39997217

Gene position: 2337618-2338979 (Clockwise)

Preceding gene: 39997216

Following gene: 39997218

Centisome position: 61.29

GC content: 47.5

Gene sequence:

>1362_bases
ATGAAACAATTTACCGACCGTTACCTCACCTCTCTCAAACCTCAAGATAAAAAATATGTCGTAAGAGAGGGCCGAGGATT
CGCGATCCAGGTGCTGCCTTCAGGAACAAAGACATTTATGTATATCTTTGAACTGAACAAGCAGAAGGGGTACCTACTGC
TCGGCAATTATCCCGCCATGTCCTTGGGTGATGCCCGGATAGCTTACAACGACGCATATAAACTCGTCAAGAACGGCATC
GATCCACGCGAGGAAAAAAGAACAGCTATCGAGGAACAATCTCGATTGGCAAATGAGGCTAGACTTCAAGCTGAAGCTGC
AGCCCTTGCTGCTGAGAAATTGGAAAAAGATTCCTTTGATTCCCTGATAGAGGATGAACTCCCCGAAGGATACACCCCGA
TAACCGTAGAACAGCTCGCTGCGATATGGTACGTCAAATACTCTAAGGAGAATCATTCAGTTCGATGGCGAGAAACTATC
CTTAGCGCTATCAAGACCCACATCATTCCCGGTATCGGCAAAATGGAAATTTCCTCTGTCAGACACAAGCATGCTGTTTC
TCTCATCGAGCAAATTGCATCCAAGGTCCCGGGATCGGCTCGTAACGTGATGAAATTTGGCAGACAAATGTTCAAATATG
CCTGTCGGCAAGAGTGGGCGGAGATTCAGCCGTTCCAGGAGATCACAGCATCTGTCCCCAAGATTGCCCCCAAAACTGAC
GACCGGCATCTTGATGACGACGAAATCGTGAAGGCGTGGAAAGAAATCAGCAAGGGACCAAGCTCTACCGAGGTCAAGCG
TGCGCTTAAATTGATTCTGGTAACCGCTCAGCGCCCCGGAGAAGTTGCACAAATTCACCGTGATCAGATCAAGGACAGAT
GGTGGACTATCCCTGCAGAGGTTGCTGGCAAAAATGAACGTGAGCACAGAGTCTACTTGACTGACACTGCTCTGGAGCTG
ATCGGACAAGGTAAAGGGTACATCTTCTCATCTGGCCGAGGGAAAAGAGGCCATATTTCCGAGAACACTCTTTCACAAGC
CATAAATCGAGGTTATTTGGACGAAGATGTTGTGAAAGTTGTTGGGAACAGAAAAATCAAAGCGCGCAAAGAACCTTACT
TCGGGATGAAGCCATGGTCGCCGCATGATCTTCGCCGAACCGCACGCACAAATATGGCACGAGTTGGCATTACAGACGAA
GTTGGCGAAGAAGTCATAAATCACATCAAGCCAGGCATAGTCGGCGTTTACAATAAATATCGTTATGACAATGAGAAAAA
GGACGCCCTTTTGAAGTGGGAAGCCTTGTTACTGAACATTCTGTCACCCAAACCGCAGGATAGTAATGCAGATGGAGAAT
AG

Upstream 100 bases:

>100_bases
CCCCGCTTGCCAACCATAAAACGGATGCAAAACGGATGCAAAGGGGTCAAGCGACACTCAAAACGGATGCAAAACGGATG
CAAAGAAAATGGGGAGAACG

Downstream 100 bases:

>100_bases
TTCCATCGTGCATTTGCTTGATCATTCGAAGCAGATCTGAATATTTCACCTTGAGAATCTCTATCAACATAGAGTAACTT
TGTCCCCTCTCCCCTCCCCC

Product: integrative genetic element Gsu56, integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MKQFTDRYLTSLKPQDKKYVVREGRGFAIQVLPSGTKTFMYIFELNKQKGYLLLGNYPAMSLGDARIAYNDAYKLVKNGI
DPREEKRTAIEEQSRLANEARLQAEAAALAAEKLEKDSFDSLIEDELPEGYTPITVEQLAAIWYVKYSKENHSVRWRETI
LSAIKTHIIPGIGKMEISSVRHKHAVSLIEQIASKVPGSARNVMKFGRQMFKYACRQEWAEIQPFQEITASVPKIAPKTD
DRHLDDDEIVKAWKEISKGPSSTEVKRALKLILVTAQRPGEVAQIHRDQIKDRWWTIPAEVAGKNEREHRVYLTDTALEL
IGQGKGYIFSSGRGKRGHISENTLSQAINRGYLDEDVVKVVGNRKIKARKEPYFGMKPWSPHDLRRTARTNMARVGITDE
VGEEVINHIKPGIVGVYNKYRYDNEKKDALLKWEALLLNILSPKPQDSNADGE

Sequences:

>Translated_453_residues
MKQFTDRYLTSLKPQDKKYVVREGRGFAIQVLPSGTKTFMYIFELNKQKGYLLLGNYPAMSLGDARIAYNDAYKLVKNGI
DPREEKRTAIEEQSRLANEARLQAEAAALAAEKLEKDSFDSLIEDELPEGYTPITVEQLAAIWYVKYSKENHSVRWRETI
LSAIKTHIIPGIGKMEISSVRHKHAVSLIEQIASKVPGSARNVMKFGRQMFKYACRQEWAEIQPFQEITASVPKIAPKTD
DRHLDDDEIVKAWKEISKGPSSTEVKRALKLILVTAQRPGEVAQIHRDQIKDRWWTIPAEVAGKNEREHRVYLTDTALEL
IGQGKGYIFSSGRGKRGHISENTLSQAINRGYLDEDVVKVVGNRKIKARKEPYFGMKPWSPHDLRRTARTNMARVGITDE
VGEEVINHIKPGIVGVYNKYRYDNEKKDALLKWEALLLNILSPKPQDSNADGE
>Mature_453_residues
MKQFTDRYLTSLKPQDKKYVVREGRGFAIQVLPSGTKTFMYIFELNKQKGYLLLGNYPAMSLGDARIAYNDAYKLVKNGI
DPREEKRTAIEEQSRLANEARLQAEAAALAAEKLEKDSFDSLIEDELPEGYTPITVEQLAAIWYVKYSKENHSVRWRETI
LSAIKTHIIPGIGKMEISSVRHKHAVSLIEQIASKVPGSARNVMKFGRQMFKYACRQEWAEIQPFQEITASVPKIAPKTD
DRHLDDDEIVKAWKEISKGPSSTEVKRALKLILVTAQRPGEVAQIHRDQIKDRWWTIPAEVAGKNEREHRVYLTDTALEL
IGQGKGYIFSSGRGKRGHISENTLSQAINRGYLDEDVVKVVGNRKIKARKEPYFGMKPWSPHDLRRTARTNMARVGITDE
VGEEVINHIKPGIVGVYNKYRYDNEKKDALLKWEALLLNILSPKPQDSNADGE

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=449, Percent_Identity=22.4944320712695, Blast_Score=89, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 51563; Mature: 51563

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQFTDRYLTSLKPQDKKYVVREGRGFAIQVLPSGTKTFMYIFELNKQKGYLLLGNYPAM
CCCHHHHHHHHCCCCCCHHHEECCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCC
SLGDARIAYNDAYKLVKNGIDPREEKRTAIEEQSRLANEARLQAEAAALAAEKLEKDSFD
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIEDELPEGYTPITVEQLAAIWYVKYSKENHSVRWRETILSAIKTHIIPGIGKMEISSV
HHHHHHCCCCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
RHKHAVSLIEQIASKVPGSARNVMKFGRQMFKYACRQEWAEIQPFQEITASVPKIAPKTD
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC
DRHLDDDEIVKAWKEISKGPSSTEVKRALKLILVTAQRPGEVAQIHRDQIKDRWWTIPAE
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHEECCHH
VAGKNEREHRVYLTDTALELIGQGKGYIFSSGRGKRGHISENTLSQAINRGYLDEDVVKV
HCCCCCCCCEEEEEHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHH
VGNRKIKARKEPYFGMKPWSPHDLRRTARTNMARVGITDEVGEEVINHIKPGIVGVYNKY
HCCCCEECCCCCCCCCCCCCHHHHHHHHHHCHHCCCCCHHHHHHHHHHHCCCCEEHHHHH
RYDNEKKDALLKWEALLLNILSPKPQDSNADGE
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKQFTDRYLTSLKPQDKKYVVREGRGFAIQVLPSGTKTFMYIFELNKQKGYLLLGNYPAM
CCCHHHHHHHHCCCCCCHHHEECCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCC
SLGDARIAYNDAYKLVKNGIDPREEKRTAIEEQSRLANEARLQAEAAALAAEKLEKDSFD
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIEDELPEGYTPITVEQLAAIWYVKYSKENHSVRWRETILSAIKTHIIPGIGKMEISSV
HHHHHHCCCCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
RHKHAVSLIEQIASKVPGSARNVMKFGRQMFKYACRQEWAEIQPFQEITASVPKIAPKTD
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCC
DRHLDDDEIVKAWKEISKGPSSTEVKRALKLILVTAQRPGEVAQIHRDQIKDRWWTIPAE
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHEECCHH
VAGKNEREHRVYLTDTALELIGQGKGYIFSSGRGKRGHISENTLSQAINRGYLDEDVVKV
HCCCCCCCCEEEEEHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHHHH
VGNRKIKARKEPYFGMKPWSPHDLRRTARTNMARVGITDEVGEEVINHIKPGIVGVYNKY
HCCCCEECCCCCCCCCCCCCHHHHHHHHHHCHHCCCCCHHHHHHHHHHHCCCCEEHHHHH
RYDNEKKDALLKWEALLLNILSPKPQDSNADGE
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]