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The map label for this gene is rarA [H]

Identifier: 39997165

GI number: 39997165

Start: 2268975

End: 2270297

Strand: Direct

Name: rarA [H]

Synonym: GSU2067

Alternate gene names: 39997165

Gene position: 2268975-2270297 (Clockwise)

Preceding gene: 39997164

Following gene: 39997166

Centisome position: 59.49

GC content: 61.07

Gene sequence:

>1323_bases
ATGGACCTCTTTGATGCACCCGCTGCAGCAGAAGCCCTGAGGAATGCTCCCCTCGCCGAACGGATGCGTCCCCGCACCCT
AGACGAGTACGTGGGACAGGAGCACTTGCTGGGCGAAGGGAAACTCCTGCGCCGACTGATCGAGTCGGACACTCTCACCT
CCCTCATCTTCTGGGGCCCTCCGGGCTCGGGCAAAACAACCCTCGCCCGGGTCATCGCCAATGCAACAAAATCTCACTTC
ATCTTCTTTTCCGCCATCCTCTCGGGAATCAAGGAAATCCGCGAGATAGTAAAGGAAGCGGAGGAGGAAAAAAAGTACCG
GGGCCGCAACACCATCCTCTTTGTGGATGAGATCCACCGATTCAACAAAAGCCAGCAGGATGCGTTCCTCCCCTACGTGG
AACGGGGAACCTTCACCATCATCGGCGCCACCACCGAGAATCCCTCCTTCGAGGTGGTGGCGCCACTCCTCTCCCGCTGC
AAGGTGCTCGTGCTCAATCCCCTTTCGCAGGAAAATGTGGAGCAGATCCTGCGGAGTGCCCTGGCCGATCCTGAACGCGG
CCTCGGCGCGAGCGGCCTTGCCGCGGACGACGATGCCCTTGCCTTCATGGCAGAGCAGTCGGGCGGCGACGGCAGGGTCG
CTCTGAACACCCTGGAAACGGCAGCCCGTCTGGTAAAAAACGGCCGGATCGACCTGGAGTCCGTCCGCGAGGCGATTCAG
AAAAAGCCGCTGCTCTATGACAAGGGGGGCGAAGAGCACTACAATGTGATCTCCGCGTTCATCAAGTCCATGCGCGGCAG
CGATCCGGACGGCGCCCTCTACTGGCTCGCCCGCATGATCGAGGCCGGCGAGGACCCTCTCTTCATCCTGCGGCGGATGG
TGATCCTGGCCAGCGAAGACATCGGCAACGCCGACCCCCGGGCGCTCCAGGTAGCCGTGGCGGCACTCCAGGGGTTTCAG
CTCGTGGGCATGCCCGAGGGACGGATCATCATTGCCCAGGCCGCCACCTATCTGGCCACCGCGCCCAAGTCAAACGCCTC
CTACGCCGGCATTGACGCGGCCCTGGCTGAAGTCAGGAAGAGCGGAGCCCTGCCGGTGCCGCTTCACATCCGTAATGCGC
CCACACGGCTCATGAAGGACCTGGGCTACCATAAGGGGTACAAATATGCCCATGACTATGAGGCAGGCTACACGCCCCAG
AACTATCTGCCGGAACGGCTTGAAGGAAAACGATTTTATGCCCCGCGGGGGCACGGCTACGAGAAGACCATAAAAGAACG
CATGGACTACATCCGCACACTGAAGGAGAACGACAGCGAATGA

Upstream 100 bases:

>100_bases
GGCGTGGAGCAGATGGAAGTCCGGCCCGTTCTCGAGTTCCGCAAGCATGACGGCCCGGCGTAAGAGCGGCGGTCAGCGCA
CAACCGGCCACGATCACGAC

Downstream 100 bases:

>100_bases
AAAAAATCGGCATACTCACCAGCGGCGGCGACTGCTCGGGCATGAACGCCGCTATCCGGGCCGCGGTGCGCACGGCTATC
CGCATGAATATCGAAGTGGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MDLFDAPAAAEALRNAPLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTTLARVIANATKSHF
IFFSAILSGIKEIREIVKEAEEEKKYRGRNTILFVDEIHRFNKSQQDAFLPYVERGTFTIIGATTENPSFEVVAPLLSRC
KVLVLNPLSQENVEQILRSALADPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLETAARLVKNGRIDLESVREAIQ
KKPLLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFILRRMVILASEDIGNADPRALQVAVAALQGFQ
LVGMPEGRIIIAQAATYLATAPKSNASYAGIDAALAEVRKSGALPVPLHIRNAPTRLMKDLGYHKGYKYAHDYEAGYTPQ
NYLPERLEGKRFYAPRGHGYEKTIKERMDYIRTLKENDSE

Sequences:

>Translated_440_residues
MDLFDAPAAAEALRNAPLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTTLARVIANATKSHF
IFFSAILSGIKEIREIVKEAEEEKKYRGRNTILFVDEIHRFNKSQQDAFLPYVERGTFTIIGATTENPSFEVVAPLLSRC
KVLVLNPLSQENVEQILRSALADPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLETAARLVKNGRIDLESVREAIQ
KKPLLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFILRRMVILASEDIGNADPRALQVAVAALQGFQ
LVGMPEGRIIIAQAATYLATAPKSNASYAGIDAALAEVRKSGALPVPLHIRNAPTRLMKDLGYHKGYKYAHDYEAGYTPQ
NYLPERLEGKRFYAPRGHGYEKTIKERMDYIRTLKENDSE
>Mature_440_residues
MDLFDAPAAAEALRNAPLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGPPGSGKTTLARVIANATKSHF
IFFSAILSGIKEIREIVKEAEEEKKYRGRNTILFVDEIHRFNKSQQDAFLPYVERGTFTIIGATTENPSFEVVAPLLSRC
KVLVLNPLSQENVEQILRSALADPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLETAARLVKNGRIDLESVREAIQ
KKPLLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFILRRMVILASEDIGNADPRALQVAVAALQGFQ
LVGMPEGRIIIAQAATYLATAPKSNASYAGIDAALAEVRKSGALPVPLHIRNAPTRLMKDLGYHKGYKYAHDYEAGYTPQ
NYLPERLEGKRFYAPRGHGYEKTIKERMDYIRTLKENDSE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=445, Percent_Identity=48.9887640449438, Blast_Score=392, Evalue=1e-109,
Organism=Homo sapiens, GI18426904, Length=445, Percent_Identity=44.7191011235955, Blast_Score=336, Evalue=2e-92,
Organism=Homo sapiens, GI4506491, Length=223, Percent_Identity=26.9058295964126, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI31881687, Length=223, Percent_Identity=26.9058295964126, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI6677723, Length=221, Percent_Identity=25.7918552036199, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI31563534, Length=294, Percent_Identity=27.2108843537415, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1787119, Length=427, Percent_Identity=49.8829039812646, Blast_Score=407, Evalue=1e-114,
Organism=Escherichia coli, GI1788167, Length=216, Percent_Identity=26.8518518518519, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI71986063, Length=225, Percent_Identity=28, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17554730, Length=298, Percent_Identity=24.496644295302, Blast_Score=68, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6324111, Length=428, Percent_Identity=40.1869158878505, Blast_Score=306, Evalue=5e-84,
Organism=Saccharomyces cerevisiae, GI6324039, Length=272, Percent_Identity=26.4705882352941, Blast_Score=84, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6322528, Length=234, Percent_Identity=25.6410256410256, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI18859927, Length=226, Percent_Identity=26.1061946902655, Blast_Score=72, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48721; Mature: 48721

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFDAPAAAEALRNAPLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGP
CCCCCCCHHHHHHHCCCHHHHHCCCCHHHHCCHHHCCCCHHHHHHHHHCCCCEEEEEECC
PGSGKTTLARVIANATKSHFIFFSAILSGIKEIREIVKEAEEEKKYRGRNTILFVDEIHR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
FNKSQQDAFLPYVERGTFTIIGATTENPSFEVVAPLLSRCKVLVLNPLSQENVEQILRSA
CCCCCCCCCCCEECCCCEEEEEECCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
LADPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLETAARLVKNGRIDLESVREAIQ
HCCCCCCCCCCCCCCCCCHHEEEECCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHH
KKPLLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFILRRMVILASED
HCCCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
IGNADPRALQVAVAALQGFQLVGMPEGRIIIAQAATYLATAPKSNASYAGIDAALAEVRK
CCCCCHHHHHHHHHHHHCCEEEECCCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHH
SGALPVPLHIRNAPTRLMKDLGYHKGYKYAHDYEAGYTPQNYLPERLEGKRFYAPRGHGY
CCCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCEEECCCCCCH
EKTIKERMDYIRTLKENDSE
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDLFDAPAAAEALRNAPLAERMRPRTLDEYVGQEHLLGEGKLLRRLIESDTLTSLIFWGP
CCCCCCCHHHHHHHCCCHHHHHCCCCHHHHCCHHHCCCCHHHHHHHHHCCCCEEEEEECC
PGSGKTTLARVIANATKSHFIFFSAILSGIKEIREIVKEAEEEKKYRGRNTILFVDEIHR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
FNKSQQDAFLPYVERGTFTIIGATTENPSFEVVAPLLSRCKVLVLNPLSQENVEQILRSA
CCCCCCCCCCCEECCCCEEEEEECCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
LADPERGLGASGLAADDDALAFMAEQSGGDGRVALNTLETAARLVKNGRIDLESVREAIQ
HCCCCCCCCCCCCCCCCCHHEEEECCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHH
KKPLLYDKGGEEHYNVISAFIKSMRGSDPDGALYWLARMIEAGEDPLFILRRMVILASED
HCCCEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
IGNADPRALQVAVAALQGFQLVGMPEGRIIIAQAATYLATAPKSNASYAGIDAALAEVRK
CCCCCHHHHHHHHHHHHCCEEEECCCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHH
SGALPVPLHIRNAPTRLMKDLGYHKGYKYAHDYEAGYTPQNYLPERLEGKRFYAPRGHGY
CCCCCCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCHHHCCCEEECCCCCCH
EKTIKERMDYIRTLKENDSE
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]