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The map label for this gene is cyd-5

Identifier: 39996859

GI number: 39996859

Start: 1922145

End: 1922417

Strand: Direct

Name: cyd-5

Synonym: GSU1760

Alternate gene names: NA

Gene position: 1922145-1922417 (Clockwise)

Preceding gene: 39996858

Following gene: 39996860

Centisome position: 50.4

GC content: 51.65

Gene sequence:

>273_bases
ATGAAACGAACGGTCATTTTATTCGCTGCCATGATTCTAACCGCCTCTGTCGGCCTTGCAGCTGATGTTATCCTGTTCCC
GTCCAAAAACGGTGCCGTCACCTTCACCCACAAACGACACTCTGAATTTGTAAGGGAATGCAGGAGCTGTCACGAGAAAA
CCCCTGGTAAAATAAGAAATTTCGGCAAGGATTACGCCCACAAGACCTGCAAGGGGTGCCACGAAGTGCGGGGCGCTGGA
CCTACAAAATGCAAGCTCTGCCACACGGGCTAG

Upstream 100 bases:

>100_bases
GCGAAACGCCTCAGGATCGAAGGAAGAAAGGTATCCATACTTCAGGGGGCATGACCACGCAACATGCTCTCCGGTTATTC
CGCGATCGAGGAACGGTGCC

Downstream 100 bases:

>100_bases
CACAGCGCGCAAAACAATTCAGACGCGAAGCCGGTTACCCTTCGGATGACCGGCTTTTTTGTTGCTAAAGAGGAAAACTC
AGGGTTGTCTCCGACAAACC

Product: cytochrome C3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MKRTVILFAAMILTASVGLAADVILFPSKNGAVTFTHKRHSEFVRECRSCHEKTPGKIRNFGKDYAHKTCKGCHEVRGAG
PTKCKLCHTG

Sequences:

>Translated_90_residues
MKRTVILFAAMILTASVGLAADVILFPSKNGAVTFTHKRHSEFVRECRSCHEKTPGKIRNFGKDYAHKTCKGCHEVRGAG
PTKCKLCHTG
>Mature_90_residues
MKRTVILFAAMILTASVGLAADVILFPSKNGAVTFTHKRHSEFVRECRSCHEKTPGKIRNFGKDYAHKTCKGCHEVRGAG
PTKCKLCHTG

Specific function: May be involved in anaerobic iron respiration [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002322
- InterPro:   IPR020942 [H]

Pfam domain/function: PF02085 Cytochrom_CIII [H]

EC number: NA

Molecular weight: Translated: 9902; Mature: 9902

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
8.9 %Cys+Met (Translated Protein)
6.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
8.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTVILFAAMILTASVGLAADVILFPSKNGAVTFTHKRHSEFVRECRSCHEKTPGKIRN
CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHH
FGKDYAHKTCKGCHEVRGAGPTKCKLCHTG
CCHHHHHHHHHHHHHHCCCCCCCEEEEECC
>Mature Secondary Structure
MKRTVILFAAMILTASVGLAADVILFPSKNGAVTFTHKRHSEFVRECRSCHEKTPGKIRN
CCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHH
FGKDYAHKTCKGCHEVRGAGPTKCKLCHTG
CCHHHHHHHHHHHHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA