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The map label for this gene is nifU [H]

Identifier: 39996510

GI number: 39996510

Start: 1548282

End: 1548677

Strand: Reverse

Name: nifU [H]

Synonym: GSU1409

Alternate gene names: 39996510

Gene position: 1548677-1548282 (Counterclockwise)

Preceding gene: 39996511

Following gene: 39996509

Centisome position: 40.6

GC content: 59.85

Gene sequence:

>396_bases
ATGGCTGAGATTTATTCGGCGAAGGTATGGGATCACGTGCGCAACCCGCGCAATGTGGGGTCACTGGAGGATGCCAACGT
GGTGGTACAGGCAGGCGACCCCACCTGTGGCGATGCGGTGCTCTACTTCCTCAGGATCGAAGAGGATATCGTGCGCGACA
TCAAATTTCTCATCAAGGGATGTGGTGCGGCCATCGCCACATCGTCAGTGGCAACGGAGCTTGTCATGGGCAAGGGGCTC
GACGAGGTCATGGGGCTCTCCGATCAGATCATCGCCCAGGCCCTTGACGGGCTCCCCGAAGAGAAGATGCACTGCTCGAA
CATGGCGGCTTCGGCGCTCCACGCGGCGGTCGAGCAATACCGTGCAACAGTGGCGGGTGAGACGAAGCCCTTATGA

Upstream 100 bases:

>100_bases
GCCCTTGTGGAGCAGAAAGCCCTGGCCGTGACCGGGGATGTGCCCGAACACGGCGTATCGGATGACAACGCCGAGACCGG
GGAACGGAAAGGAACCGAAC

Downstream 100 bases:

>100_bases
GTCTCGTGGTGGGATGGCGACAAAACATATCCGGCGAAATTCGACAGGAAATACGAGGTGAACAGCATGCAGGGTGAAAA
GGTAGCGCAAAAATCATGCA

Product: NifU-like domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MAEIYSAKVWDHVRNPRNVGSLEDANVVVQAGDPTCGDAVLYFLRIEEDIVRDIKFLIKGCGAAIATSSVATELVMGKGL
DEVMGLSDQIIAQALDGLPEEKMHCSNMAASALHAAVEQYRATVAGETKPL

Sequences:

>Translated_131_residues
MAEIYSAKVWDHVRNPRNVGSLEDANVVVQAGDPTCGDAVLYFLRIEEDIVRDIKFLIKGCGAAIATSSVATELVMGKGL
DEVMGLSDQIIAQALDGLPEEKMHCSNMAASALHAAVEQYRATVAGETKPL
>Mature_130_residues
AEIYSAKVWDHVRNPRNVGSLEDANVVVQAGDPTCGDAVLYFLRIEEDIVRDIKFLIKGCGAAIATSSVATELVMGKGLD
EVMGLSDQIIAQALDGLPEEKMHCSNMAASALHAAVEQYRATVAGETKPL

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=124, Percent_Identity=41.9354838709677, Blast_Score=92, Evalue=1e-19,
Organism=Homo sapiens, GI24307953, Length=120, Percent_Identity=41.6666666666667, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788878, Length=122, Percent_Identity=43.4426229508197, Blast_Score=99, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17543474, Length=121, Percent_Identity=41.3223140495868, Blast_Score=89, Evalue=8e-19,
Organism=Saccharomyces cerevisiae, GI6324800, Length=124, Percent_Identity=42.741935483871, Blast_Score=96, Evalue=2e-21,
Organism=Saccharomyces cerevisiae, GI6325122, Length=125, Percent_Identity=40, Blast_Score=90, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21355597, Length=122, Percent_Identity=43.4426229508197, Blast_Score=94, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 14003; Mature: 13872

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEIYSAKVWDHVRNPRNVGSLEDANVVVQAGDPTCGDAVLYFLRIEEDIVRDIKFLIKG
CCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
CGAAIATSSVATELVMGKGLDEVMGLSDQIIAQALDGLPEEKMHCSNMAASALHAAVEQY
HHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
RATVAGETKPL
HHHHCCCCCCC
>Mature Secondary Structure 
AEIYSAKVWDHVRNPRNVGSLEDANVVVQAGDPTCGDAVLYFLRIEEDIVRDIKFLIKG
CCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
CGAAIATSSVATELVMGKGLDEVMGLSDQIIAQALDGLPEEKMHCSNMAASALHAAVEQY
HHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
RATVAGETKPL
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]