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The map label for this gene is gspD [H]

Identifier: 39995438

GI number: 39995438

Start: 358454

End: 360352

Strand: Reverse

Name: gspD [H]

Synonym: GSU0329

Alternate gene names: 39995438

Gene position: 360352-358454 (Counterclockwise)

Preceding gene: 39995439

Following gene: 308513280

Centisome position: 9.45

GC content: 59.98

Gene sequence:

>1899_bases
GTGAAGAAACGCTTCCTGAATCTGCTGACCGCTGCCGTCCTGGCCTGCGCCCTTCTTGCACCGCTGCCGGCGAGTGCCAA
GGGGGTGGTTCTCAACTTCAACGACGTGGACATCGCCACCATGGTGAAGTTCATCAGCGACCTGACCGGCAAGAATTTCG
TCCTGGACGAGCGGGTGAAGGGAAAGATTTCCATCTACTCCCCCTCCAAGCTGACGCCGGATGAGGCGTTCAGCCTGTTC
ACATCGGTTCTGGAGCTGAAAGGGTTCACCCTTGTACAGGCCGGCAAGGTCTACAAGGTGGTTCCTACGGCGGCAGCCAA
GCAATCAGGAATGAGGCTTTTGAGCGACAAGGACCGCCTCCCCGTGAGCGATGCCTATGTGGCCCGGATAATCCCCCTGG
AGCGCATCTCCGCCCAGGAAGCGGTGGCCTTTCTCCAGCCCATTGTCTCCAAGGACGGCTACATCGCGGCATTTGGCGCC
AGCAACATGCTGATGGTGGTTGATTCTGCCCTGAACATCCAGAAACTCACCGGCATTCTCACCTTGGTGGATTCTCCCCA
GAAGCGGGAGGGCGCCGAGATCATCTTCCTCAAAAATGCCTCGGCGGACAGCGTTTCCGGCGTGATCCGCGAATGGCTCG
GCGGCAAGACAAGCCGGCCGGCCGGCCAGGCGGGACAGGCTACCGCAACATCAAGCGCAGGGGTCCTCATCGTCCCCGAC
ACCCGGCTCAATGCGCTGGTCATTTTCGGCAGCGATCAGGACAAGGACGACATCAAGAAACTGATTGCCATGGTGGACGT
GGTCCCGCCGACCACCAGCAGCAAGATCAACGTCTACTATCTGGAGAACGCCGATGCCACCGACGTGGCAAAGGTGATCG
ACGGCCTCATCAAGGGCACGCCCACCACCCCCGGGCAGCCCGGGGTGCCCGCAGCGGCGCCCGTTCAATCCCCCTTCGAG
GGTGGAAAGATCTCGGTCACGCCGGACAAGGCTACCAACTCCCTGGTGATCATGGCCTCGCCGGTCGATTACCAGAACAT
CCTCCAGGTGATCCAGAAGCTCGATAAACGGCGGCGCCAGGTGTTCGTCCAGGCCCTCATCGCCGAAGTCTCCCTCGACA
AGCTCAAGGATGTGGGTGTTCAGATCGGCGCGCTGGCCGTGGGCACGCAGGGCGACGCGTCCGGCGGCGCCGTCCTGGAC
CCGTTCAATTTCCTCAGCGCCACCAGCGGCCCGCAATTTCTCCTGGTAAAAGCACTTGAAGAACTTGGGAAAAACGTCAG
TGTGTCGGCCCAGGTCAAGGCCCTCGTCTCCGACGGCGCCATTAATGTACTCTCCACCCCGAACATCCTGACCTCGGACA
ACAAGGAAGCGGAAATCTTCGTGGGTGAGAACGTTCCATTCCTCTCCCAGACCAATCTGACGACCGGCGGAATTTCTCAG
CAATCCATCGAGCGCAAGGATACCGGCATCACGCTCAGGATCACTCCCCAGATCAGCGAAGGGGAGTACGTGAAGCTCGA
CATCTACCAGGAAATTTCTGCAGTAAAGGAAAACAAGGGACAGGCGAATGACCTCGTCACCACCAAGCGCTCGGCCAAGA
CCGCTGTCGTGGTCAAGGACAAGGACACGGTGGTGATCGGCGGGTTGATCCAGGACCGGGACACCGAAACCATCAACAAG
ATCCCGCTGCTGGGCGACATCCCGCTTCTGGGCTGGCTGTTCAAGACCAAATCGACGCGCAGGGAGAAGACCAACCTGAT
GATCGTCCTTACGCCGCGCATCATTCGGGGAGCCGAGGAGATGAACGATGTCTCCGGCCAGCAGCGCGACAAGTTCGGCG
AAGCGCTCAGTCTCGACGCTCCCTTTGACCTCAAGCGCGACCTCCAACTGAGCAAATGA

Upstream 100 bases:

>100_bases
CGGCGTTCGCTTTGCGCTGCGCGGCAGAGTTCCTTTTTTGGGGGCTGTGGTAAGCGCACGGTAGATGCTTGTCATTGTGG
ATAACGTGCGGAGGATTTCC

Downstream 100 bases:

>100_bases
CGGACGCACACGACATGGAACAGATCGCCCGGCGGCTCGGCATCCCCTTCCTGGCCGAGATCGGGGACAATGAGGCGGAT
GCGGCACTGCTCGCGCGGCT

Product: general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 632; Mature: 632

Protein sequence:

>632_residues
MKKRFLNLLTAAVLACALLAPLPASAKGVVLNFNDVDIATMVKFISDLTGKNFVLDERVKGKISIYSPSKLTPDEAFSLF
TSVLELKGFTLVQAGKVYKVVPTAAAKQSGMRLLSDKDRLPVSDAYVARIIPLERISAQEAVAFLQPIVSKDGYIAAFGA
SNMLMVVDSALNIQKLTGILTLVDSPQKREGAEIIFLKNASADSVSGVIREWLGGKTSRPAGQAGQATATSSAGVLIVPD
TRLNALVIFGSDQDKDDIKKLIAMVDVVPPTTSSKINVYYLENADATDVAKVIDGLIKGTPTTPGQPGVPAAAPVQSPFE
GGKISVTPDKATNSLVIMASPVDYQNILQVIQKLDKRRRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLD
PFNFLSATSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPFLSQTNLTTGGISQ
QSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVTTKRSAKTAVVVKDKDTVVIGGLIQDRDTETINK
IPLLGDIPLLGWLFKTKSTRREKTNLMIVLTPRIIRGAEEMNDVSGQQRDKFGEALSLDAPFDLKRDLQLSK

Sequences:

>Translated_632_residues
MKKRFLNLLTAAVLACALLAPLPASAKGVVLNFNDVDIATMVKFISDLTGKNFVLDERVKGKISIYSPSKLTPDEAFSLF
TSVLELKGFTLVQAGKVYKVVPTAAAKQSGMRLLSDKDRLPVSDAYVARIIPLERISAQEAVAFLQPIVSKDGYIAAFGA
SNMLMVVDSALNIQKLTGILTLVDSPQKREGAEIIFLKNASADSVSGVIREWLGGKTSRPAGQAGQATATSSAGVLIVPD
TRLNALVIFGSDQDKDDIKKLIAMVDVVPPTTSSKINVYYLENADATDVAKVIDGLIKGTPTTPGQPGVPAAAPVQSPFE
GGKISVTPDKATNSLVIMASPVDYQNILQVIQKLDKRRRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLD
PFNFLSATSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPFLSQTNLTTGGISQ
QSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVTTKRSAKTAVVVKDKDTVVIGGLIQDRDTETINK
IPLLGDIPLLGWLFKTKSTRREKTNLMIVLTPRIIRGAEEMNDVSGQQRDKFGEALSLDAPFDLKRDLQLSK
>Mature_632_residues
MKKRFLNLLTAAVLACALLAPLPASAKGVVLNFNDVDIATMVKFISDLTGKNFVLDERVKGKISIYSPSKLTPDEAFSLF
TSVLELKGFTLVQAGKVYKVVPTAAAKQSGMRLLSDKDRLPVSDAYVARIIPLERISAQEAVAFLQPIVSKDGYIAAFGA
SNMLMVVDSALNIQKLTGILTLVDSPQKREGAEIIFLKNASADSVSGVIREWLGGKTSRPAGQAGQATATSSAGVLIVPD
TRLNALVIFGSDQDKDDIKKLIAMVDVVPPTTSSKINVYYLENADATDVAKVIDGLIKGTPTTPGQPGVPAAAPVQSPFE
GGKISVTPDKATNSLVIMASPVDYQNILQVIQKLDKRRRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLD
PFNFLSATSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPFLSQTNLTTGGISQ
QSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVTTKRSAKTAVVVKDKDTVVIGGLIQDRDTETINK
IPLLGDIPLLGWLFKTKSTRREKTNLMIVLTPRIIRGAEEMNDVSGQQRDKFGEALSLDAPFDLKRDLQLSK

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=628, Percent_Identity=32.1656050955414, Blast_Score=267, Evalue=2e-72,
Organism=Escherichia coli, GI1789793, Length=281, Percent_Identity=24.1992882562278, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 67629; Mature: 67629

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRFLNLLTAAVLACALLAPLPASAKGVVLNFNDVDIATMVKFISDLTGKNFVLDERVK
CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCC
GKISIYSPSKLTPDEAFSLFTSVLELKGFTLVQAGKVYKVVPTAAAKQSGMRLLSDKDRL
CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEECCCHHHHHCCCHHHCCCCCC
PVSDAYVARIIPLERISAQEAVAFLQPIVSKDGYIAAFGASNMLMVVDSALNIQKLTGIL
CCCCCHHHHCCCHHHHCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCHHHHHHEE
TLVDSPQKREGAEIIFLKNASADSVSGVIREWLGGKTSRPAGQAGQATATSSAGVLIVPD
EEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECC
TRLNALVIFGSDQDKDDIKKLIAMVDVVPPTTSSKINVYYLENADATDVAKVIDGLIKGT
CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCC
PTTPGQPGVPAAAPVQSPFEGGKISVTPDKATNSLVIMASPVDYQNILQVIQKLDKRRRQ
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
VFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLDPFNFLSATSGPQFLLVKALE
HHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEECCHHHHHCCCCCHHHHHHHHH
ELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPFLSQTNLTTGGISQ
HHCCCCEEHHHEEEECCCCCEEEEECCCEEECCCCCEEEEECCCCCCEECCCCCCCCCCH
QSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVTTKRSAKTAVVVKD
HHHHHHCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEEC
KDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKSTRREKTNLMIVLTPRIIRGAEE
CCEEEEEEEECCCCCCHHHCCCCCCCCHHHHHHHHCCCCCHHHCCEEEEECCHHHCCHHH
MNDVSGQQRDKFGEALSLDAPFDLKRDLQLSK
HHHCCCHHHHHHCCEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKRFLNLLTAAVLACALLAPLPASAKGVVLNFNDVDIATMVKFISDLTGKNFVLDERVK
CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCC
GKISIYSPSKLTPDEAFSLFTSVLELKGFTLVQAGKVYKVVPTAAAKQSGMRLLSDKDRL
CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEECCCHHHHHCCCHHHCCCCCC
PVSDAYVARIIPLERISAQEAVAFLQPIVSKDGYIAAFGASNMLMVVDSALNIQKLTGIL
CCCCCHHHHCCCHHHHCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCHHHHHHEE
TLVDSPQKREGAEIIFLKNASADSVSGVIREWLGGKTSRPAGQAGQATATSSAGVLIVPD
EEECCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECC
TRLNALVIFGSDQDKDDIKKLIAMVDVVPPTTSSKINVYYLENADATDVAKVIDGLIKGT
CCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCC
PTTPGQPGVPAAAPVQSPFEGGKISVTPDKATNSLVIMASPVDYQNILQVIQKLDKRRRQ
CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
VFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLDPFNFLSATSGPQFLLVKALE
HHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCEEECCHHHHHCCCCCHHHHHHHHH
ELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPFLSQTNLTTGGISQ
HHCCCCEEHHHEEEECCCCCEEEEECCCEEECCCCCEEEEECCCCCCEECCCCCCCCCCH
QSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVTTKRSAKTAVVVKD
HHHHHHCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEEC
KDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKSTRREKTNLMIVLTPRIIRGAEE
CCEEEEEEEECCCCCCHHHCCCCCCCCHHHHHHHHCCCCCHHHCCEEEEECCHHHCCHHH
MNDVSGQQRDKFGEALSLDAPFDLKRDLQLSK
HHHCCCHHHHHHCCEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]