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The map label for this gene is cspLA [H]

Identifier: 39995301

GI number: 39995301

Start: 203766

End: 203966

Strand: Reverse

Name: cspLA [H]

Synonym: GSU0191

Alternate gene names: 39995301

Gene position: 203966-203766 (Counterclockwise)

Preceding gene: 39995303

Following gene: 39995300

Centisome position: 5.35

GC content: 47.26

Gene sequence:

>201_bases
ATGGTAAACGGTACGGTAAAATGGTTCAACGACAGCAAGGGGTTTGGTTTTCTTGAGCAGGAAAATGGTGAAGACGTGTT
TTGTCATTTTTCCGCCATTTCGGGTGACGGATTCAAATCCCTTACTGAAGGCGATAGAGTAACGTTTGAAATCACCAAGG
GGCCGAAAGGCCTCCAGGCTGCAAACGTGACCAGAGCGTAA

Upstream 100 bases:

>100_bases
TAAATAGGTTGACTTACCTGGAACAAAACTGTTAGGTTCGATACAAGTTCGGCATGACGCCTGACAAAAACAACAGGAAG
TATCAGGAGAAAGTACACAC

Downstream 100 bases:

>100_bases
CCGCTTGTCCCCAGCAGACAAAAAAGCCCCGGGTACCCCCGGGGCTTTTTTGTCTCTGAAATTTCGGTCCACGACATTAA
ATCCGCGGCAGCATCGGTTT

Product: cold-shock domain-contain protein

Products: NA

Alternate protein names: CspL [H]

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MVNGTVKWFNDSKGFGFLEQENGEDVFCHFSAISGDGFKSLTEGDRVTFEITKGPKGLQAANVTRA

Sequences:

>Translated_66_residues
MVNGTVKWFNDSKGFGFLEQENGEDVFCHFSAISGDGFKSLTEGDRVTFEITKGPKGLQAANVTRA
>Mature_66_residues
MVNGTVKWFNDSKGFGFLEQENGEDVFCHFSAISGDGFKSLTEGDRVTFEITKGPKGLQAANVTRA

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=65.0793650793651, Blast_Score=82, Evalue=4e-18,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=60.9375, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=57.8125, Blast_Score=74, Evalue=1e-15,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=49.2307692307692, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=55.5555555555556, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=53.125, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=48.4375, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7188; Mature: 7188

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNGTVKWFNDSKGFGFLEQENGEDVFCHFSAISGDGFKSLTEGDRVTFEITKGPKGLQA
CCCCEEEEEECCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCC
ANVTRA
CCEECC
>Mature Secondary Structure
MVNGTVKWFNDSKGFGFLEQENGEDVFCHFSAISGDGFKSLTEGDRVTFEITKGPKGLQA
CCCCEEEEEECCCCCCEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCC
ANVTRA
CCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669; 9439003 [H]