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The map label for this gene is comF [H]

Identifier: 39995235

GI number: 39995235

Start: 138515

End: 139231

Strand: Reverse

Name: comF [H]

Synonym: GSU0124

Alternate gene names: 39995235

Gene position: 139231-138515 (Counterclockwise)

Preceding gene: 39995236

Following gene: 39995234

Centisome position: 3.65

GC content: 69.46

Gene sequence:

>717_bases
GTGATCGTCCGGGCGCTGCTCGACATCCTCTTCCCTCCCCTCTGCCACCTGTGTCGCGCCCCCATCCCGGGGGCGGAGAA
GCTTCACCTCTGCCCCGCCTGCCTCGCCCGGGCAAAGCCGATCGGCTCGCCCCTCTGCACTGTGTGCGGAGTTCCCTTCG
CCACCGAAGGGGGAATCGACCACCGCTGCGGCGACTGCATCGTCTCCCCGCCTCCCTATGAGGGAGCCCGGGCCGCCTAC
CTCTTCGAGGGACCGGTGCAGGAACTGGTGCACCGCTTCAAGTACGGCCACAAGGCTCACCTGCGCCGCCCCCTGGCCCT
CCTGGCAGCGGAGCGGCTTTCTTCCTTCGTGGCCGAGTCAGCCTCCGACCTGATCATCCCGGTCCCCCTTCATCGCTCCC
GTCTCCGGGAGCGCGGCTTCAACCAGGCGATCCTGATGGGCGAACTGCTTGCCAGACGGTGGCGCATCCCTTTGCACCGC
GCCACCCTGGGCCGGGTCCGCGCCACGGCCCCCCAAGTGGGGCTCACCTCCGCCCAGCGGCGGGAAAATATCCGGGGAGC
CTTTGCCGTCCCCTCCCCCGCTGCGGTGGCCGGCCGGAGGGTACTGCTGCTGGACGACGTCTTCACCACGGGTAGCACCA
TTGCCGAATGTGCCCTGGTCCTCCGGAAGGCCGGAGCCGCCGCAGTCCACGCCGCAACTGTTGCCAGAACCCCCTAG

Upstream 100 bases:

>100_bases
CCCGGACCGGATCTGCCGGATCACCACGGTGATCGACCGCAACCCCCGGCTCACGGACCTCAGGGTCCTGGTGGTGAACG
AAGACATGGGGCTCTAGCCG

Downstream 100 bases:

>100_bases
CTCCCCCTTCCCCACCTCGGGTTTCCACCCAGATTGTCACTTGACAACACCAGGACCATCGCGGAAAGTATACACTAACA
AATAACGTTTTATCATACTG

Product: competence protein F

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MIVRALLDILFPPLCHLCRAPIPGAEKLHLCPACLARAKPIGSPLCTVCGVPFATEGGIDHRCGDCIVSPPPYEGARAAY
LFEGPVQELVHRFKYGHKAHLRRPLALLAAERLSSFVAESASDLIIPVPLHRSRLRERGFNQAILMGELLARRWRIPLHR
ATLGRVRATAPQVGLTSAQRRENIRGAFAVPSPAAVAGRRVLLLDDVFTTGSTIAECALVLRKAGAAAVHAATVARTP

Sequences:

>Translated_238_residues
MIVRALLDILFPPLCHLCRAPIPGAEKLHLCPACLARAKPIGSPLCTVCGVPFATEGGIDHRCGDCIVSPPPYEGARAAY
LFEGPVQELVHRFKYGHKAHLRRPLALLAAERLSSFVAESASDLIIPVPLHRSRLRERGFNQAILMGELLARRWRIPLHR
ATLGRVRATAPQVGLTSAQRRENIRGAFAVPSPAAVAGRRVLLLDDVFTTGSTIAECALVLRKAGAAAVHAATVARTP
>Mature_238_residues
MIVRALLDILFPPLCHLCRAPIPGAEKLHLCPACLARAKPIGSPLCTVCGVPFATEGGIDHRCGDCIVSPPPYEGARAAY
LFEGPVQELVHRFKYGHKAHLRRPLALLAAERLSSFVAESASDLIIPVPLHRSRLRERGFNQAILMGELLARRWRIPLHR
ATLGRVRATAPQVGLTSAQRRENIRGAFAVPSPAAVAGRRVLLLDDVFTTGSTIAECALVLRKAGAAAVHAATVARTP

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=235, Percent_Identity=34.0425531914894, Blast_Score=112, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 25641; Mature: 25641

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVRALLDILFPPLCHLCRAPIPGAEKLHLCPACLARAKPIGSPLCTVCGVPFATEGGID
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCC
HRCGDCIVSPPPYEGARAAYLFEGPVQELVHRFKYGHKAHLRRPLALLAAERLSSFVAES
CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
ASDLIIPVPLHRSRLRERGFNQAILMGELLARRWRIPLHRATLGRVRATAPQVGLTSAQR
CCCCEEECCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHH
RENIRGAFAVPSPAAVAGRRVLLLDDVFTTGSTIAECALVLRKAGAAAVHAATVARTP
HHCCCCEECCCCCHHHHCCEEEEEECHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCC
>Mature Secondary Structure
MIVRALLDILFPPLCHLCRAPIPGAEKLHLCPACLARAKPIGSPLCTVCGVPFATEGGID
CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCC
HRCGDCIVSPPPYEGARAAYLFEGPVQELVHRFKYGHKAHLRRPLALLAAERLSSFVAES
CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
ASDLIIPVPLHRSRLRERGFNQAILMGELLARRWRIPLHRATLGRVRATAPQVGLTSAQR
CCCCEEECCCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHHH
RENIRGAFAVPSPAAVAGRRVLLLDDVFTTGSTIAECALVLRKAGAAAVHAATVARTP
HHCCCCEECCCCCHHHHCCEEEEEECHHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]