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The map label for this gene is rarD [H]

Identifier: 38234156

GI number: 38234156

Start: 1610019

End: 1610918

Strand: Direct

Name: rarD [H]

Synonym: DIP1581

Alternate gene names: 38234156

Gene position: 1610019-1610918 (Clockwise)

Preceding gene: 38234150

Following gene: 38234160

Centisome position: 64.69

GC content: 50.89

Gene sequence:

>900_bases
ATGAAGAGTAAGTGTTCCCTAATGATCTACGGAATTCTGGCGTATTTACTTTGGGGACTCTTCCCAGCATTTTTCCCGCT
GCTCCTTCCCGCCGCACCGCTAGAAATCATCGCACACAGAATTCTTTGGACAGGTGTATTCATGGCCATCGCGGTCGTGA
TAACCCGCCAGTGGCGCGAGCTGCTATCTGCAGGAAAAGGTCAATGGTTACGCCTAGCGCTCGCCTCGGTTCTCATCGCT
GCTAACTGGCTCATCTACGTGATTGCCGTAAACACAGGCCACGTTGCTGATGCCGCTTTTGGGTATTTTATTAACCCAAT
TGTCAACGTTGTTTTGGGTGTTGCTTTTCTGCGAGAACGCCTACGCCCTTTGCAATCGCTGAGCGTGGTGATCGCTGCGG
CTGCCGTGGTAGTTCTGTCAGTTTTCGGTGGCAGCGCTCCTCTGCTTTCTTTAAGCCTCGCACTCTCCTTCGGCTTTTAT
GGGCTAGTAAAAAAGAAAGTCACAATCTCTGCAGCTGCTTCACTGACCGCCGAAACCTTTGTGTTGCTGCCATTAGCTTT
GGGCTACATCATTTACCTCGAAATAACAGGTCCGGGCACTTTCGTTTCCCACGGCCCAGCCCATGCAGGATTACTTATTA
GCGCCGGTGCCATCACCGCAGTCCCACTTCTACTTTTCGGATTAGCCACGAAATTCATTCCGCTTTCAACGATCGGCATG
TTGCAATACATGACACCCACATTCCAAATGCTGTGGGCTGTCTTTGTGGTCAATGAGAATATCGAACCGCTGAAATGGGT
AGGGTTTGGCATCATTTGGATTTCTGTCGCCATGTACATTGGCGACGTCCTCCTGCAGCGTCGCCAAAGAACGTTACGGC
TCCACAACAGGAGCAAGTAG

Upstream 100 bases:

>100_bases
ACTTCGCCAAAACGAGTGCCCAGCACACAGCATATTGAAATTAATTTCCATTAATATTTTTGGGTGAATTATCGGGGGCG
AAACTTGCCCATAACCTCAC

Downstream 100 bases:

>100_bases
ACCGATTCTCCCCCATGCAGCGTCAGGTGGAAGAACCTCCACCGTCGCAACGCGTTGCGACGCAGCCACGCGCCGGAGTT
GATCACCCGGCGCGTACACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKSKCSLMIYGILAYLLWGLFPAFFPLLLPAAPLEIIAHRILWTGVFMAIAVVITRQWRELLSAGKGQWLRLALASVLIA
ANWLIYVIAVNTGHVADAAFGYFINPIVNVVLGVAFLRERLRPLQSLSVVIAAAAVVVLSVFGGSAPLLSLSLALSFGFY
GLVKKKVTISAAASLTAETFVLLPLALGYIIYLEITGPGTFVSHGPAHAGLLISAGAITAVPLLLFGLATKFIPLSTIGM
LQYMTPTFQMLWAVFVVNENIEPLKWVGFGIIWISVAMYIGDVLLQRRQRTLRLHNRSK

Sequences:

>Translated_299_residues
MKSKCSLMIYGILAYLLWGLFPAFFPLLLPAAPLEIIAHRILWTGVFMAIAVVITRQWRELLSAGKGQWLRLALASVLIA
ANWLIYVIAVNTGHVADAAFGYFINPIVNVVLGVAFLRERLRPLQSLSVVIAAAAVVVLSVFGGSAPLLSLSLALSFGFY
GLVKKKVTISAAASLTAETFVLLPLALGYIIYLEITGPGTFVSHGPAHAGLLISAGAITAVPLLLFGLATKFIPLSTIGM
LQYMTPTFQMLWAVFVVNENIEPLKWVGFGIIWISVAMYIGDVLLQRRQRTLRLHNRSK
>Mature_299_residues
MKSKCSLMIYGILAYLLWGLFPAFFPLLLPAAPLEIIAHRILWTGVFMAIAVVITRQWRELLSAGKGQWLRLALASVLIA
ANWLIYVIAVNTGHVADAAFGYFINPIVNVVLGVAFLRERLRPLQSLSVVIAAAAVVVLSVFGGSAPLLSLSLALSFGFY
GLVKKKVTISAAASLTAETFVLLPLALGYIIYLEITGPGTFVSHGPAHAGLLISAGAITAVPLLLFGLATKFIPLSTIGM
LQYMTPTFQMLWAVFVVNENIEPLKWVGFGIIWISVAMYIGDVLLQRRQRTLRLHNRSK

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=280, Percent_Identity=39.6428571428571, Blast_Score=196, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32520; Mature: 32520

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKCSLMIYGILAYLLWGLFPAFFPLLLPAAPLEIIAHRILWTGVFMAIAVVITRQWRE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSAGKGQWLRLALASVLIAANWLIYVIAVNTGHVADAAFGYFINPIVNVVLGVAFLRER
HHHCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRPLQSLSVVIAAAAVVVLSVFGGSAPLLSLSLALSFGFYGLVKKKVTISAAASLTAETF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLPLALGYIIYLEITGPGTFVSHGPAHAGLLISAGAITAVPLLLFGLATKFIPLSTIGM
HHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHH
LQYMTPTFQMLWAVFVVNENIEPLKWVGFGIIWISVAMYIGDVLLQRRQRTLRLHNRSK
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKSKCSLMIYGILAYLLWGLFPAFFPLLLPAAPLEIIAHRILWTGVFMAIAVVITRQWRE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSAGKGQWLRLALASVLIAANWLIYVIAVNTGHVADAAFGYFINPIVNVVLGVAFLRER
HHHCCCCHHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LRPLQSLSVVIAAAAVVVLSVFGGSAPLLSLSLALSFGFYGLVKKKVTISAAASLTAETF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLLPLALGYIIYLEITGPGTFVSHGPAHAGLLISAGAITAVPLLLFGLATKFIPLSTIGM
HHHHHHHHHEEEEEECCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHH
LQYMTPTFQMLWAVFVVNENIEPLKWVGFGIIWISVAMYIGDVLLQRRQRTLRLHNRSK
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA