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The map label for this gene is 38234044

Identifier: 38234044

GI number: 38234044

Start: 1481579

End: 1483633

Strand: Reverse

Name: 38234044

Synonym: DIP1463

Alternate gene names: NA

Gene position: 1483633-1481579 (Counterclockwise)

Preceding gene: 38234045

Following gene: 38234043

Centisome position: 59.62

GC content: 51.73

Gene sequence:

>2055_bases
ATGACTGAACCTCGTAGCCGTGCGCGCAAGGTTACCCGTAAAGCTGGACCTCCGGAAGCTGCGGAGACGCCAGTTTTCCA
AGCACCTGATTCTACTGCGACGGCTGAGCCGGCAGATTCTGCCGTAAAGAACTCCGAAAAGGCTGAAAAAGATTCTTCTG
CGGAGTCTTCACGAAACAACCGCGGACGCAACGCTCAGCGCGGTGGTCGTAATCGTCGTGGAAATGGTTCTTCTAATCGT
TCTTCACAATCGAAGAACAACCAGTCCAACAATAGAGGACGACGCACCCCTGTGAAATCGATGCAGGGTGCAGATCTTAC
GCAGAGGCTGCCTGAGCCACCTAAGGCTCCGAAGAATGGTCTGCGCATTTATGCCTTGGGTGGTATTTCTGAGATTGGTC
GTAACATGACCGTCTTCGAGTACAACAATCGTTTGCTGATCGTTGACTGTGGCGTTTTGTTCCCGTCATCGGGTGAGCCG
GGAGTGGACCTAATTCTTCCGGACTTTGGACCGATCGAGAATAAGCTCGACAAAGTTGATGCTTTGGTGATTACTCACGG
TCACGAAGACCACATCGGTGCAATTCCGTGGCTGCTTAAGTTGCGTCCGGATATGCCGATTTTGGCTTCCAAGTTCACTA
TGGCATTGATTGCTGCAAAGTGCCGTGAGCATCGTCAGCGTCCGAAGCTCATTGAAGTGAACGAGAAATCGGATATAAAC
CGCGGTCCGTTCAACATTCGCTTCTGGGCAGTCAACCACTCGATTCCTGATTGCCTCGGCGTTGCTATTAAAACTGGTGC
CGGATTGGTTATTCATACTGGCGACGTGAAGCTTGATCAGACCCCACCAGATGGTCGCCCAACCGATTTGCCTGCACTTT
CTCGCTTCGGTGATGAGGGAGTGGATTTGCTTCTTTGTGAGTCAACCAATGCAACTGTTCCGGGATTCTCCGGTTCTGAA
GCAGACGTCGCTCCAACTTTGAAGCGCCTGATCAGTGATGCAAAGCAACGTGTTATCTTGGCGTCATTCGCATCAAACGT
CTATCGCGTTCAGGCAGCCGTTGATGCGGCTGTTGCTGCGGGTCGTAAGGTAGCGTTCAATGGACGCTCCATGATTCGAA
ACATGGAAATCGCCGAGAAGATGGGCTATTTGAAAGCACCTCGCGGCACCATTGTCAGCATGGATGATGCAGCCAAGATG
GCGCCGCACAAGGTTGTACTGATCACAACTGGTACCCAAGGCGAACCTATGGCAGCTTTGTCGCGTATGGCACGTCGTGA
GCATCGACAAATCACTGTTCGCGATGGTGATTTGATCATTCTGTCGTCTTCATTGGTTCCCGGTAACGAAGAAGCAGTTT
TCGGTGTAATGAATATGCTGTCCCAGATTGGTGCGACTGTGGTAACTGGCCGTGATGCCAAGGTCCACACCTCGGGACAC
GGATTCGCCGGAGAGCTGTTGTTCCTATACAACGCTGCTCGTCCTAAGAACGTCATGCCGGTTCACGGCGAATGGCGACA
CCTGCGGGCTAACAAGGAACTGGCTATTTCCACCGGTGTGGAAGCAGACCGAGTTGTATTAGCTCAAAACGGTGTTGTAG
TTGACCTTGTTGATGGTCGTGCTCGTGTTGTTGGTCAGATGCAGGTTGGACACCTTTATGTTGATGGTGTGACCATGGGC
GATATTGATGCTGAAGTTTTGGAAGAGCGTACTTCCTTGGGTGAAGGCGGCTTGATCGCTATTACCGCAGTTATTGATTC
GCGTACTGCTCGATTGCTTGAGCGTCCGACAGTCCAAGCCAAGGGATTCTCTGAAGACGCAGTAGCGATGATGCCAGAGG
TAACTGAGCTGGTTGAAAAGACGATGAACGATCTGGCTGCAGAAGGCGAAAATGATCCATATCGTATGGTTCAGCAGTTG
CGCCGTCGTGTTTCACGATTCGTCGAGCAGAAGTGGCGTCGTAAGCCAATGATTATGCCAACGGTCATCCCGACTACATC
AGCGACCATCGATATCGATGACGCTGATGTGCGTGCGAGCCGCGAAAGTCAGTAG

Upstream 100 bases:

>100_bases
GAATTGAGGTTGGAGATCCCCGTCTTCCTATTGTGGCTCCTAGTGAGTCCGAGATTGAGGATCTTCGCCGTGATATGAAT
AAAACTGGAGTATTGTAAAT

Downstream 100 bases:

>100_bases
TTCCTAGTTACTGATTAATCCCTCGGAGGTTGTCGCTTTACTAAAGGCAACCTTTGGGGGATTTTTTATCTCTACAATGG
ATCAAATGAACCTGGCAACT

Product: hypothetical protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 684; Mature: 683

Protein sequence:

>684_residues
MTEPRSRARKVTRKAGPPEAAETPVFQAPDSTATAEPADSAVKNSEKAEKDSSAESSRNNRGRNAQRGGRNRRGNGSSNR
SSQSKNNQSNNRGRRTPVKSMQGADLTQRLPEPPKAPKNGLRIYALGGISEIGRNMTVFEYNNRLLIVDCGVLFPSSGEP
GVDLILPDFGPIENKLDKVDALVITHGHEDHIGAIPWLLKLRPDMPILASKFTMALIAAKCREHRQRPKLIEVNEKSDIN
RGPFNIRFWAVNHSIPDCLGVAIKTGAGLVIHTGDVKLDQTPPDGRPTDLPALSRFGDEGVDLLLCESTNATVPGFSGSE
ADVAPTLKRLISDAKQRVILASFASNVYRVQAAVDAAVAAGRKVAFNGRSMIRNMEIAEKMGYLKAPRGTIVSMDDAAKM
APHKVVLITTGTQGEPMAALSRMARREHRQITVRDGDLIILSSSLVPGNEEAVFGVMNMLSQIGATVVTGRDAKVHTSGH
GFAGELLFLYNAARPKNVMPVHGEWRHLRANKELAISTGVEADRVVLAQNGVVVDLVDGRARVVGQMQVGHLYVDGVTMG
DIDAEVLEERTSLGEGGLIAITAVIDSRTARLLERPTVQAKGFSEDAVAMMPEVTELVEKTMNDLAAEGENDPYRMVQQL
RRRVSRFVEQKWRRKPMIMPTVIPTTSATIDIDDADVRASRESQ

Sequences:

>Translated_684_residues
MTEPRSRARKVTRKAGPPEAAETPVFQAPDSTATAEPADSAVKNSEKAEKDSSAESSRNNRGRNAQRGGRNRRGNGSSNR
SSQSKNNQSNNRGRRTPVKSMQGADLTQRLPEPPKAPKNGLRIYALGGISEIGRNMTVFEYNNRLLIVDCGVLFPSSGEP
GVDLILPDFGPIENKLDKVDALVITHGHEDHIGAIPWLLKLRPDMPILASKFTMALIAAKCREHRQRPKLIEVNEKSDIN
RGPFNIRFWAVNHSIPDCLGVAIKTGAGLVIHTGDVKLDQTPPDGRPTDLPALSRFGDEGVDLLLCESTNATVPGFSGSE
ADVAPTLKRLISDAKQRVILASFASNVYRVQAAVDAAVAAGRKVAFNGRSMIRNMEIAEKMGYLKAPRGTIVSMDDAAKM
APHKVVLITTGTQGEPMAALSRMARREHRQITVRDGDLIILSSSLVPGNEEAVFGVMNMLSQIGATVVTGRDAKVHTSGH
GFAGELLFLYNAARPKNVMPVHGEWRHLRANKELAISTGVEADRVVLAQNGVVVDLVDGRARVVGQMQVGHLYVDGVTMG
DIDAEVLEERTSLGEGGLIAITAVIDSRTARLLERPTVQAKGFSEDAVAMMPEVTELVEKTMNDLAAEGENDPYRMVQQL
RRRVSRFVEQKWRRKPMIMPTVIPTTSATIDIDDADVRASRESQ
>Mature_683_residues
TEPRSRARKVTRKAGPPEAAETPVFQAPDSTATAEPADSAVKNSEKAEKDSSAESSRNNRGRNAQRGGRNRRGNGSSNRS
SQSKNNQSNNRGRRTPVKSMQGADLTQRLPEPPKAPKNGLRIYALGGISEIGRNMTVFEYNNRLLIVDCGVLFPSSGEPG
VDLILPDFGPIENKLDKVDALVITHGHEDHIGAIPWLLKLRPDMPILASKFTMALIAAKCREHRQRPKLIEVNEKSDINR
GPFNIRFWAVNHSIPDCLGVAIKTGAGLVIHTGDVKLDQTPPDGRPTDLPALSRFGDEGVDLLLCESTNATVPGFSGSEA
DVAPTLKRLISDAKQRVILASFASNVYRVQAAVDAAVAAGRKVAFNGRSMIRNMEIAEKMGYLKAPRGTIVSMDDAAKMA
PHKVVLITTGTQGEPMAALSRMARREHRQITVRDGDLIILSSSLVPGNEEAVFGVMNMLSQIGATVVTGRDAKVHTSGHG
FAGELLFLYNAARPKNVMPVHGEWRHLRANKELAISTGVEADRVVLAQNGVVVDLVDGRARVVGQMQVGHLYVDGVTMGD
IDAEVLEERTSLGEGGLIAITAVIDSRTARLLERPTVQAKGFSEDAVAMMPEVTELVEKTMNDLAAEGENDPYRMVQQLR
RRVSRFVEQKWRRKPMIMPTVIPTTSATIDIDDADVRASRESQ

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 74370; Mature: 74239

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS00595 AA_TRANSFER_CLASS_5 ; PS01292 UPF0036

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPRSRARKVTRKAGPPEAAETPVFQAPDSTATAEPADSAVKNSEKAEKDSSAESSRNN
CCCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCHHHHCCCCHHHHHCC
RGRNAQRGGRNRRGNGSSNRSSQSKNNQSNNRGRRTPVKSMQGADLTQRLPEPPKAPKNG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCC
LRIYALGGISEIGRNMTVFEYNNRLLIVDCGVLFPSSGEPGVDLILPDFGPIENKLDKVD
EEEEEECCHHHHCCCEEEEEECCEEEEEECCEEECCCCCCCCEEECCCCCCHHHHHHHEE
ALVITHGHEDHIGAIPWLLKLRPDMPILASKFTMALIAAKCREHRQRPKLIEVNEKSDIN
EEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
RGPFNIRFWAVNHSIPDCLGVAIKTGAGLVIHTGDVKLDQTPPDGRPTDLPALSRFGDEG
CCCEEEEEEEECCCCCHHHHHHEECCCEEEEEECCEEECCCCCCCCCCCCHHHHHCCCCC
VDLLLCESTNATVPGFSGSEADVAPTLKRLISDAKQRVILASFASNVYRVQAAVDAAVAA
CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEHHHHHCCCEEHHHHHHHHHHC
GRKVAFNGRSMIRNMEIAEKMGYLKAPRGTIVSMDDAAKMAPHKVVLITTGTQGEPMAAL
CCEEEECCHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHCCCCEEEEEEECCCCCHHHHH
SRMARREHRQITVRDGDLIILSSSLVPGNEEAVFGVMNMLSQIGATVVTGRDAKVHTSGH
HHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEECCC
GFAGELLFLYNAARPKNVMPVHGEWRHLRANKELAISTGVEADRVVLAQNGVVVDLVDGR
CCCEEEEEEEECCCCCCCCCCCCCHHEECCCCCEEEECCCCCCEEEEECCCEEEEEECCC
ARVVGQMQVGHLYVDGVTMGDIDAEVLEERTSLGEGGLIAITAVIDSRTARLLERPTVQA
EEEEEEEEECEEEECCEEECCCCHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCCCC
KGFSEDAVAMMPEVTELVEKTMNDLAAEGENDPYRMVQQLRRRVSRFVEQKWRRKPMIMP
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
TVIPTTSATIDIDDADVRASRESQ
EEECCCCCEEECCCCCCCCCCCCC
>Mature Secondary Structure 
TEPRSRARKVTRKAGPPEAAETPVFQAPDSTATAEPADSAVKNSEKAEKDSSAESSRNN
CCHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCHHHHCCCCHHHHHCC
RGRNAQRGGRNRRGNGSSNRSSQSKNNQSNNRGRRTPVKSMQGADLTQRLPEPPKAPKNG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHHCCCCCCCCCCC
LRIYALGGISEIGRNMTVFEYNNRLLIVDCGVLFPSSGEPGVDLILPDFGPIENKLDKVD
EEEEEECCHHHHCCCEEEEEECCEEEEEECCEEECCCCCCCCEEECCCCCCHHHHHHHEE
ALVITHGHEDHIGAIPWLLKLRPDMPILASKFTMALIAAKCREHRQRPKLIEVNEKSDIN
EEEEECCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
RGPFNIRFWAVNHSIPDCLGVAIKTGAGLVIHTGDVKLDQTPPDGRPTDLPALSRFGDEG
CCCEEEEEEEECCCCCHHHHHHEECCCEEEEEECCEEECCCCCCCCCCCCHHHHHCCCCC
VDLLLCESTNATVPGFSGSEADVAPTLKRLISDAKQRVILASFASNVYRVQAAVDAAVAA
CEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHEEHHHHHCCCEEHHHHHHHHHHC
GRKVAFNGRSMIRNMEIAEKMGYLKAPRGTIVSMDDAAKMAPHKVVLITTGTQGEPMAAL
CCEEEECCHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHCCCCEEEEEEECCCCCHHHHH
SRMARREHRQITVRDGDLIILSSSLVPGNEEAVFGVMNMLSQIGATVVTGRDAKVHTSGH
HHHHHHHCCEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEECCC
GFAGELLFLYNAARPKNVMPVHGEWRHLRANKELAISTGVEADRVVLAQNGVVVDLVDGR
CCCEEEEEEEECCCCCCCCCCCCCHHEECCCCCEEEECCCCCCEEEEECCCEEEEEECCC
ARVVGQMQVGHLYVDGVTMGDIDAEVLEERTSLGEGGLIAITAVIDSRTARLLERPTVQA
EEEEEEEEECEEEECCEEECCCCHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCCCC
KGFSEDAVAMMPEVTELVEKTMNDLAAEGENDPYRMVQQLRRRVSRFVEQKWRRKPMIMP
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE
TVIPTTSATIDIDDADVRASRESQ
EEECCCCCEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]