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The map label for this gene is yfcA [C]

Identifier: 38233963

GI number: 38233963

Start: 1395368

End: 1396120

Strand: Reverse

Name: yfcA [C]

Synonym: DIP1378

Alternate gene names: 38233963

Gene position: 1396120-1395368 (Counterclockwise)

Preceding gene: 38233964

Following gene: 38233962

Centisome position: 56.1

GC content: 49.4

Gene sequence:

>753_bases
ATGTCCGGCCACTCCAAATGGGCTACAACCAAACATAAAAAAGCAGCCAACGACGCCAAGCGCGGCAAAGAGTTTGCCAA
GCTCATCAAGAACATCGAAGTAGCTGCGCGTACCGGCGGCGGCGATCCTTCAGCAAACCCGACTCTTGATGACATGATCA
AGAAGGCCAAAAAGGCTTCAGTTCCAAACGACAACATCGAACGTGCTCGCAAACGCGGCTCTGGAGAAGAAGCCGGTGGC
GCTGACTGGCAAACCATTATGTATGAGGGTTACGGTCCAAATGGCGTAGCTGTACTTATTGAGTGCCTTACAGATAACCG
CAACAGGGCAGCTTCCGAAGTTCGAACTGCGATGAGTAAAAATGGTGGCAACATGGCAGAAAACGGTGCAGTTTCCTACA
TGTTCAAGCGTCGCGGATTTGTCCTTGTAAATAAAGGCGAACTAACTGAAGACGATGTGCTCATGGCAGTACTTGACGCA
GGTGCAGAGGAAGTAAGTGACGCCGGCGATAAGTTTGAGATTCTTTCCGCGCCGGGTGATGTAGCTGCAATTCGTGATGC
ACTGGCAGAAGCAGAAATTGAAGTGGAGGATTCTGATTCTGATTTCCGTGCTGATGTTCTGGTTCCGCTCGAAGCTAATG
ATGCCCGAAAGATTTTCCGGCTAATTGATGCCCTTGAAGAGTCTGACGACGTTCAAAATGTTTACACCAATATGGATCTG
AGCGACGAAGTTCTAGCAGAGCTGGAAGCATAA

Upstream 100 bases:

>100_bases
CTCAAGAAAAACATCGCAATGTTACTACGCTGAAACAGCTCATCAACATTCGACATGACGATGCTCAGACCACGGTGTCA
GACTAAATGAAAGGGAGCCA

Downstream 100 bases:

>100_bases
TACTTTTTGTTTTGTTTCAAGCGGTTGTCGTGTCCTGCTATGGGCGCAGCAGCCGCTTTTCGCAATTATGTGCTAAATTG
AAGTGTCAATGGTTTTACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MSGHSKWATTKHKKAANDAKRGKEFAKLIKNIEVAARTGGGDPSANPTLDDMIKKAKKASVPNDNIERARKRGSGEEAGG
ADWQTIMYEGYGPNGVAVLIECLTDNRNRAASEVRTAMSKNGGNMAENGAVSYMFKRRGFVLVNKGELTEDDVLMAVLDA
GAEEVSDAGDKFEILSAPGDVAAIRDALAEAEIEVEDSDSDFRADVLVPLEANDARKIFRLIDALEESDDVQNVYTNMDL
SDEVLAELEA

Sequences:

>Translated_250_residues
MSGHSKWATTKHKKAANDAKRGKEFAKLIKNIEVAARTGGGDPSANPTLDDMIKKAKKASVPNDNIERARKRGSGEEAGG
ADWQTIMYEGYGPNGVAVLIECLTDNRNRAASEVRTAMSKNGGNMAENGAVSYMFKRRGFVLVNKGELTEDDVLMAVLDA
GAEEVSDAGDKFEILSAPGDVAAIRDALAEAEIEVEDSDSDFRADVLVPLEANDARKIFRLIDALEESDDVQNVYTNMDL
SDEVLAELEA
>Mature_249_residues
SGHSKWATTKHKKAANDAKRGKEFAKLIKNIEVAARTGGGDPSANPTLDDMIKKAKKASVPNDNIERARKRGSGEEAGGA
DWQTIMYEGYGPNGVAVLIECLTDNRNRAASEVRTAMSKNGGNMAENGAVSYMFKRRGFVLVNKGELTEDDVLMAVLDAG
AEEVSDAGDKFEILSAPGDVAAIRDALAEAEIEVEDSDSDFRADVLVPLEANDARKIFRLIDALEESDDVQNVYTNMDLS
DEVLAELEA

Specific function: Unknown

COG id: COG0217

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TACO1 family

Homologues:

Organism=Homo sapiens, GI27545315, Length=248, Percent_Identity=27.4193548387097, Blast_Score=107, Evalue=7e-24,
Organism=Escherichia coli, GI1788171, Length=249, Percent_Identity=45.7831325301205, Blast_Score=216, Evalue=1e-57,
Organism=Escherichia coli, GI1788294, Length=239, Percent_Identity=37.2384937238494, Blast_Score=124, Evalue=8e-30,
Organism=Caenorhabditis elegans, GI17556100, Length=247, Percent_Identity=24.2914979757085, Blast_Score=73, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321458, Length=263, Percent_Identity=33.4600760456274, Blast_Score=124, Evalue=1e-29,
Organism=Drosophila melanogaster, GI24583305, Length=252, Percent_Identity=25, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1378_CORDI (P62034)

Other databases:

- EMBL:   BX248358
- RefSeq:   NP_939730.1
- ProteinModelPortal:   P62034
- SMR:   P62034
- GeneID:   2649909
- GenomeReviews:   BX248353_GR
- KEGG:   cdi:DIP1378
- NMPDR:   fig|257309.1.peg.1321
- HOGENOM:   HBG715231
- OMA:   VYANFDI
- PhylomeDB:   P62034
- ProtClustDB:   PRK00110
- BioCyc:   CDIP257309:DIP1378-MONOMER
- HAMAP:   MF_00693
- InterPro:   IPR002876
- InterPro:   IPR017856
- Gene3D:   G3DSA:1.10.10.200
- PANTHER:   PTHR12532
- TIGRFAMs:   TIGR01033

Pfam domain/function: PF01709 DUF28; SSF75625 DUF28

EC number: NA

Molecular weight: Translated: 26969; Mature: 26838

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGHSKWATTKHKKAANDAKRGKEFAKLIKNIEVAARTGGGDPSANPTLDDMIKKAKKAS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHCC
VPNDNIERARKRGSGEEAGGADWQTIMYEGYGPNGVAVLIECLTDNRNRAASEVRTAMSK
CCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHC
NGGNMAENGAVSYMFKRRGFVLVNKGELTEDDVLMAVLDAGAEEVSDAGDKFEILSAPGD
CCCCCCCCCHHHEEEECCCEEEEECCCCCHHHHHHHHHHCCHHHHHCCCCCEEEEECCCH
VAAIRDALAEAEIEVEDSDSDFRADVLVPLEANDARKIFRLIDALEESDDVQNVYTNMDL
HHHHHHHHHHCEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHCCCC
SDEVLAELEA
CHHHHHHHCC
>Mature Secondary Structure 
SGHSKWATTKHKKAANDAKRGKEFAKLIKNIEVAARTGGGDPSANPTLDDMIKKAKKAS
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHCC
VPNDNIERARKRGSGEEAGGADWQTIMYEGYGPNGVAVLIECLTDNRNRAASEVRTAMSK
CCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHC
NGGNMAENGAVSYMFKRRGFVLVNKGELTEDDVLMAVLDAGAEEVSDAGDKFEILSAPGD
CCCCCCCCCHHHEEEECCCEEEEECCCCCHHHHHHHHHHCCHHHHHCCCCCEEEEECCCH
VAAIRDALAEAEIEVEDSDSDFRADVLVPLEANDARKIFRLIDALEESDDVQNVYTNMDL
HHHHHHHHHHCEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCHHHHHHHHCCCC
SDEVLAELEA
CHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14602910