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The map label for this gene is ypfJ [C]

Identifier: 38233940

GI number: 38233940

Start: 1369837

End: 1370721

Strand: Direct

Name: ypfJ [C]

Synonym: DIP1354

Alternate gene names: 38233940

Gene position: 1369837-1370721 (Clockwise)

Preceding gene: 38233924

Following gene: 38233944

Centisome position: 55.04

GC content: 48.7

Gene sequence:

>885_bases
ATGACTTTTCGTGGCGGTATAGAAAAACCAGAAAATCTTGCCAGATCGGGCGGCGGTGGCGGCGGACGCATCGCTGCAGG
AGGCGGCATAGGAACATTACTGCTCGTAGGATTATTCCTACTCATGGGCGGCAATCCATCAGACTTGGGTCAAATTATTG
GCTCTGATTCTGCGCAAAATCAACAACAAGCGCCCTCTGGGACTTTGGAACATTGCAAGACAACGGATGATGCAAATGCA
CATGCGGACTGTCGTGTCGAATTTACTGCTATTTCGGTTAATCAAATGTGGCAAGAACAACTTCAAAAGCAAGCTGGAAT
TGCGTTCGAAAAACCCAACATCACAGTATTCTCACAAGCGGTTTCCACAGGTTGCGGCACCGCCTCATCTGCTACCGGCC
CTTTTTATTGCCCCCGCGATCGCACCGCCTATTTTGATGTTAGCTTCTTTGATTCCCTACAACGTTACGGAGGCGAAAAT
ACTCCGTTCGCGCAGGAATACATTGTGGCACATGAGATCGGGCATCATATTCAAAACCTAGAAGGCACACTAGGACTATC
TGATTATAATGATCCCGGTCCTAATTCGAATGCAGTCAAGATTGAGTTACAGGCCGACTGCTATGCGGGTGTCTGGGGGC
ATTACGCAGATAAAGGGGATAATGCCTTCCTTGAACCGATCACCAAACAACAAGTCAATGATGCTATAACGGCGGCTCGC
GCAGTTGGCGATGACAACATCCAAGAACGCGCAACCGGAAGAGTCAACACCGAATCGTTTACTCACGGTTCTTCCGATCA
GAGACAACGAGCATTCCTCGCAGGCTATAATTCAGGGAAAATGAGCAGCTGCGATACTCTCGATCGACACGTGTACAAAG
ACTAA

Upstream 100 bases:

>100_bases
TTTTTCATTTGGGACCATTTCCACCCATGCCACTTTCAAATTTGCATTTACGCTGCATAAAGGAACTCCTCACGGCTAAA
ACCTATGGCATGATGAAAAC

Downstream 100 bases:

>100_bases
TTTGTTTTTAGCCGCAAAGTCATATTTGCACGATGGTTAATGGCTCTTTTTCAACTTGAATAGTTGGAAAAAGAGCCATC
TTAGTTATCAATCTGTAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTFRGGIEKPENLARSGGGGGGRIAAGGGIGTLLLVGLFLLMGGNPSDLGQIIGSDSAQNQQQAPSGTLEHCKTTDDANA
HADCRVEFTAISVNQMWQEQLQKQAGIAFEKPNITVFSQAVSTGCGTASSATGPFYCPRDRTAYFDVSFFDSLQRYGGEN
TPFAQEYIVAHEIGHHIQNLEGTLGLSDYNDPGPNSNAVKIELQADCYAGVWGHYADKGDNAFLEPITKQQVNDAITAAR
AVGDDNIQERATGRVNTESFTHGSSDQRQRAFLAGYNSGKMSSCDTLDRHVYKD

Sequences:

>Translated_294_residues
MTFRGGIEKPENLARSGGGGGGRIAAGGGIGTLLLVGLFLLMGGNPSDLGQIIGSDSAQNQQQAPSGTLEHCKTTDDANA
HADCRVEFTAISVNQMWQEQLQKQAGIAFEKPNITVFSQAVSTGCGTASSATGPFYCPRDRTAYFDVSFFDSLQRYGGEN
TPFAQEYIVAHEIGHHIQNLEGTLGLSDYNDPGPNSNAVKIELQADCYAGVWGHYADKGDNAFLEPITKQQVNDAITAAR
AVGDDNIQERATGRVNTESFTHGSSDQRQRAFLAGYNSGKMSSCDTLDRHVYKD
>Mature_293_residues
TFRGGIEKPENLARSGGGGGGRIAAGGGIGTLLLVGLFLLMGGNPSDLGQIIGSDSAQNQQQAPSGTLEHCKTTDDANAH
ADCRVEFTAISVNQMWQEQLQKQAGIAFEKPNITVFSQAVSTGCGTASSATGPFYCPRDRTAYFDVSFFDSLQRYGGENT
PFAQEYIVAHEIGHHIQNLEGTLGLSDYNDPGPNSNAVKIELQADCYAGVWGHYADKGDNAFLEPITKQQVNDAITAARA
VGDDNIQERATGRVNTESFTHGSSDQRQRAFLAGYNSGKMSSCDTLDRHVYKD

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=274, Percent_Identity=33.9416058394161, Blast_Score=161, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 31467; Mature: 31336

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFRGGIEKPENLARSGGGGGGRIAAGGGIGTLLLVGLFLLMGGNPSDLGQIIGSDSAQN
CCCCCCCCCHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
QQQAPSGTLEHCKTTDDANAHADCRVEFTAISVNQMWQEQLQKQAGIAFEKPNITVFSQA
HHCCCCCHHHHHCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHCCEEECCCCEEEHHH
VSTGCGTASSATGPFYCPRDRTAYFDVSFFDSLQRYGGENTPFAQEYIVAHEIGHHIQNL
HHCCCCCCCCCCCCEECCCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
EGTLGLSDYNDPGPNSNAVKIELQADCYAGVWGHYADKGDNAFLEPITKQQVNDAITAAR
CCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHH
AVGDDNIQERATGRVNTESFTHGSSDQRQRAFLAGYNSGKMSSCDTLDRHVYKD
HCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TFRGGIEKPENLARSGGGGGGRIAAGGGIGTLLLVGLFLLMGGNPSDLGQIIGSDSAQN
CCCCCCCCHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC
QQQAPSGTLEHCKTTDDANAHADCRVEFTAISVNQMWQEQLQKQAGIAFEKPNITVFSQA
HHCCCCCHHHHHCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHHCCEEECCCCEEEHHH
VSTGCGTASSATGPFYCPRDRTAYFDVSFFDSLQRYGGENTPFAQEYIVAHEIGHHIQNL
HHCCCCCCCCCCCCEECCCCCCEEEEHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
EGTLGLSDYNDPGPNSNAVKIELQADCYAGVWGHYADKGDNAFLEPITKQQVNDAITAAR
CCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHH
AVGDDNIQERATGRVNTESFTHGSSDQRQRAFLAGYNSGKMSSCDTLDRHVYKD
HCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHEECCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]